Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13c18
(609 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75525-5|CAA99764.1| 162|Caenorhabditis elegans Hypothetical pr... 132 1e-31
AF003151-13|AAK18907.1| 159|Caenorhabditis elegans Ribosomal pr... 38 0.007
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 31 0.49
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 31 0.85
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 31 0.85
U41541-2|ABA54426.1| 526|Caenorhabditis elegans Hypothetical pr... 30 1.5
U41541-1|ABA54425.1| 795|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical pr... 29 2.6
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 29 2.6
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 29 2.6
Z92831-6|CAB07365.2| 355|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z92777-12|CAJ58496.1| 355|Caenorhabditis elegans Hypothetical p... 29 3.4
AC084161-2|AAK29732.3| 782|Caenorhabditis elegans Hypothetical ... 29 3.4
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 28 4.5
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 28 4.5
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 28 6.0
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 28 6.0
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 28 6.0
AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain, ... 27 7.9
AF038621-2|AAK71385.1| 329|Caenorhabditis elegans Hypothetical ... 27 7.9
>Z75525-5|CAA99764.1| 162|Caenorhabditis elegans Hypothetical
protein C03D6.8 protein.
Length = 162
Score = 132 bits (320), Expect = 1e-31
Identities = 67/161 (41%), Positives = 97/161 (60%), Gaps = 3/161 (1%)
Frame = +3
Query: 63 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 242
MRIE CYFCSS +YPGHGIQFVRND +F+FCRS+C+ F A R+ G
Sbjct: 1 MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARRARG 60
Query: 243 KELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEW 422
KEL D + E+RR+ P+KY R ++ KTIEA K + ++ +R N I +RL+ G+ V+
Sbjct: 61 KELINDATQLLEQRRDEPVKYERAMFQKTIEAAKTISALKTKRYGNLIRKRLQPGKIVQK 120
Query: 423 QRDVREVQRDISLIKSPAA---GLKQRQALEATEMEVEPET 536
+ + +V + + LI++P A G+K R A + + ET
Sbjct: 121 KGLLAKVDKKMHLIRAPVANRDGVKTRAAAKEKKTAESMET 161
>AF003151-13|AAK18907.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 24.1 protein.
Length = 159
Score = 37.5 bits (83), Expect = 0.007
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 63 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSK 167
M++ETC + +++PGHG + VR D K+ F K
Sbjct: 1 MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGK 35
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 31.5 bits (68), Expect = 0.49
Identities = 26/108 (24%), Positives = 49/108 (45%)
Frame = +3
Query: 270 EFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQR 449
E E+ R + RE K E +K+ E ++ + + + RE E +++ RE +R
Sbjct: 184 EEEEERRKEKEKRREEKKKQKELLKEKERSERKEKERELEREKEKSREKEREKE-REKER 242
Query: 450 DISLIKSPAAGLKQRQALEATEMEVEPETIEVVDAKGRKQIIEAPVMV 593
+ K KQ++ + E E E E +A+ +K+ PV++
Sbjct: 243 EKEREKERE---KQKEREKEREKEREKEKKREEEARRKKEEASTPVII 287
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 30.7 bits (66), Expect = 0.85
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +2
Query: 416 RVAKRRARSPERHLFDKVTSGWSETATSFR-SHRNGSGTRDNRSCGR*RQET 568
R K+R +SP R D GW T S + R SG NRS R Q T
Sbjct: 477 RKKKKRPKSPNRSKKDSRAFGWDSTDESDEDTRRRRSGRSQNRSSERKFQTT 528
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 30.7 bits (66), Expect = 0.85
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +2
Query: 416 RVAKRRARSPERHLFDKVTSGWSETATSFR-SHRNGSGTRDNRSCGR*RQET 568
R K+R +SP R D GW T S + R SG NRS R Q T
Sbjct: 477 RKKKKRPKSPNRSKKDSRAFGWDSTDESDEDTRRRRSGRSQNRSSERKFQTT 528
>U41541-2|ABA54426.1| 526|Caenorhabditis elegans Hypothetical
protein C41A3.2b protein.
Length = 526
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/77 (28%), Positives = 40/77 (51%)
Frame = +3
Query: 237 AGKELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREV 416
AG E + + + KRR + R + E KKV+E ++R ++ + +++ REV
Sbjct: 429 AGNEKELSKTEQRAKRRQRVREKARLCAEQAKEEEKKVKE-QKRIEHDLRIMSMKKEREV 487
Query: 417 EWQRDVREVQRDISLIK 467
+ Q D + +RDI I+
Sbjct: 488 KHQLDFEKRKRDIDNIR 504
>U41541-1|ABA54425.1| 795|Caenorhabditis elegans Hypothetical
protein C41A3.2a protein.
Length = 795
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/77 (28%), Positives = 40/77 (51%)
Frame = +3
Query: 237 AGKELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREV 416
AG E + + + KRR + R + E KKV+E ++R ++ + +++ REV
Sbjct: 429 AGNEKELSKTEQRAKRRQRVREKARLCAEQAKEEEKKVKE-QKRIEHDLRIMSMKKEREV 487
Query: 417 EWQRDVREVQRDISLIK 467
+ Q D + +RDI I+
Sbjct: 488 KHQLDFEKRKRDIDNIR 504
>Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical
protein T24D1.2 protein.
Length = 464
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/71 (32%), Positives = 27/71 (38%)
Frame = +2
Query: 392 AIETGQRGRVAKRRARSPERHLFDKVTSGWSETATSFRSHRNGSGTRDNRSCGR*RQETD 571
A+ R R A R SP + T+G S+ S S G GTR S R R
Sbjct: 44 AVARRGRNRAAARERASPYSRSRIRSTAGTSDAGPSSSSSVRGRGTRGTTSARRGRGSA- 102
Query: 572 Y*GSGHGTCNR 604
G T NR
Sbjct: 103 --RGGEATMNR 111
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/68 (26%), Positives = 38/68 (55%)
Frame = +3
Query: 276 EKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDI 455
E+R+N + E +++E EEI++ +S + Q+L Q E++ +R V+E+
Sbjct: 392 EQRQNEEVARQGEDSARSMEEKATKEEIKKLKSQVQLQQQLEQDLELQKKR-VQELTEQR 450
Query: 456 SLIKSPAA 479
+++S A+
Sbjct: 451 KVLESKAS 458
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/68 (26%), Positives = 38/68 (55%)
Frame = +3
Query: 276 EKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDI 455
E+R+N + E +++E EEI++ +S + Q+L Q E++ +R V+E+
Sbjct: 392 EQRQNEEVARQGEDSARSMEEKATKEEIKKLKSQVQLQQQLEQDLELQKKR-VQELTEQR 450
Query: 456 SLIKSPAA 479
+++S A+
Sbjct: 451 KVLESKAS 458
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 29.1 bits (62), Expect = 2.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 13 DVCCQNSARHTCLKPIK 63
D CCQN+ TC++P+K
Sbjct: 229 DKCCQNACGSTCMEPLK 245
>Z92831-6|CAB07365.2| 355|Caenorhabditis elegans Hypothetical
protein F22G12.1 protein.
Length = 355
Score = 28.7 bits (61), Expect = 3.4
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Frame = +3
Query: 300 KYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQG----REVEWQRDVREVQRDISLIK 467
K E K IE +K+ + +++ + + R+G RE+E QR+ E QR L+
Sbjct: 69 KAAEERHNKAIEELKRSHKNDKKKLESELESIKRKGEKDVREIEQQREALEKQRTEDLVN 128
Query: 468 SPAAGLK----QRQALEATEMEVEPETIEVVDAKGRKQIIE 578
K + +A++ E + +E +D K ++ IE
Sbjct: 129 HQETMRKLNETKFEAIKKKRDEQQTLKMEEMDEKSKRMAIE 169
>Z92777-12|CAJ58496.1| 355|Caenorhabditis elegans Hypothetical
protein F22G12.1 protein.
Length = 355
Score = 28.7 bits (61), Expect = 3.4
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Frame = +3
Query: 300 KYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQG----REVEWQRDVREVQRDISLIK 467
K E K IE +K+ + +++ + + R+G RE+E QR+ E QR L+
Sbjct: 69 KAAEERHNKAIEELKRSHKNDKKKLESELESIKRKGEKDVREIEQQREALEKQRTEDLVN 128
Query: 468 SPAAGLK----QRQALEATEMEVEPETIEVVDAKGRKQIIE 578
K + +A++ E + +E +D K ++ IE
Sbjct: 129 HQETMRKLNETKFEAIKKKRDEQQTLKMEEMDEKSKRMAIE 169
>AC084161-2|AAK29732.3| 782|Caenorhabditis elegans Hypothetical
protein Y92H12A.4 protein.
Length = 782
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 129 GQIGFRVQDKPWMNRNNMFLYAFYWFQARVACTVLTANV 13
G F + + +M N+M WF+++ AC L AN+
Sbjct: 148 GSSDFATKQRIFMKLNSMIRENEAWFKSQKACAALVANI 186
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/69 (24%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +3
Query: 333 EAMKKVEEIRQRRSNNYIMQRLRQGREVE-WQRDVREVQRDISLIKSPAAGLKQRQA-LE 506
+A + EE+RQ + ++ ++R+R+G E++ + +R + + +K + Q +A +
Sbjct: 1774 DAARLAEELRQEQEHSMHIERIRKGLELQIKEMQIRLDDAENAALKGGKKIIAQLEARIR 1833
Query: 507 ATEMEVEPE 533
A E E++ E
Sbjct: 1834 AIEQELDGE 1842
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/69 (24%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +3
Query: 333 EAMKKVEEIRQRRSNNYIMQRLRQGREVE-WQRDVREVQRDISLIKSPAAGLKQRQA-LE 506
+A + EE+RQ + ++ ++R+R+G E++ + +R + + +K + Q +A +
Sbjct: 1774 DAARLAEELRQEQEHSMHIERIRKGLELQIKEMQIRLDDAENAALKGGKKIIAQLEARIR 1833
Query: 507 ATEMEVEPE 533
A E E++ E
Sbjct: 1834 AIEQELDGE 1842
>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical protein
F59A6.5 protein.
Length = 1286
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 61 KCV*KHVIS-VHPGFILDTESNLSGMTAKFSDSVVQNATQRLKRRRIPVKLNGLKLT 228
+CV HVI + G ++ SN S +FS + Q + +RR N LK T
Sbjct: 1228 ECVNAHVIGRQYEGVLISVSSNDSTEVHRFSTATGQKQKNNVSKRRGASPYNSLKRT 1284
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/52 (32%), Positives = 32/52 (61%)
Frame = +3
Query: 333 EAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLK 488
+A + EE+RQ + ++ + RLR+G E + ++E+Q + L ++ AA LK
Sbjct: 1770 DATRLAEELRQEQEHSQHVDRLRKGLE----QQLKEIQ--VRLDEAEAAALK 1815
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
F11C3.3 protein.
Length = 1963
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/52 (32%), Positives = 32/52 (61%)
Frame = +3
Query: 333 EAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLK 488
+A + EE+RQ + ++ + RLR+G E + ++E+Q + L ++ AA LK
Sbjct: 1770 DATRLAEELRQEQEHSQHVDRLRKGLE----QQLKEIQ--VRLDEAEAAALK 1815
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/52 (32%), Positives = 32/52 (61%)
Frame = +3
Query: 333 EAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLK 488
+A + EE+RQ + ++ + RLR+G E + ++E+Q + L ++ AA LK
Sbjct: 1773 DATRLAEELRQEQEHSQHVDRLRKGLE----QQLKEIQ--VRLDEAEAAALK 1818
>AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 8, isoform a protein.
Length = 1219
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/89 (17%), Positives = 40/89 (44%)
Frame = +3
Query: 270 EFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQR 449
E ++R + K E + +++ ++ Q+ NY++ + + E ++ E +
Sbjct: 957 EEKERLEIEAKKEAERQREIKRKLEEQQQNAQKEHENYLISEIHKAAEETEKKRQNEEKE 1016
Query: 450 DISLIKSPAAGLKQRQALEATEMEVEPET 536
+ + S AL +++ME+EP +
Sbjct: 1017 KLDKMVSNRLAEADGVALISSKMEIEPSS 1045
>AF038621-2|AAK71385.1| 329|Caenorhabditis elegans Hypothetical
protein M116.4 protein.
Length = 329
Score = 27.5 bits (58), Expect = 7.9
Identities = 24/113 (21%), Positives = 43/113 (38%)
Frame = -2
Query: 545 NFYXXXXXXXXXXXXXXXXFQTSRW*LYQRDVSLDFSHVSLPLYLSALSQSLHNIIITPS 366
NFY T++W + +VS SH+ + + SLHN I +
Sbjct: 75 NFYLLTDTTFLRFIDSQKTIDTTQWINQKVNVSQFISHILEIFHRPKVKLSLHNTIRCET 134
Query: 365 LSDLFHFLHSFDCFSPQFAIVFQGHISSLFKLKGWVYRQFLTRSLTVSFSPFS 207
+ ++F D F +F GH + F K + ++ ++ PF+
Sbjct: 135 M-NIFEMFAGLDI--ETFQTIFYGHYKTSFYEKTLKMFALQSEAIRLNKLPFN 184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,703,531
Number of Sequences: 27780
Number of extensions: 268865
Number of successful extensions: 841
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -