Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13c16
         (441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.1  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.6  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 267 TIYASIVLKRKI*RWRFQLVNAHVCILQNKI 359
           T+   + LKR   +  FQ +N+ VC L +K+
Sbjct: 380 TLSTKLTLKRHKEQQHFQPLNSAVCALCHKV 410


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 77  RLRRKCEASPVRDRILSSPEP 139
           RLRR+ EA P  +R +  P+P
Sbjct: 115 RLRREPEAEPGNNRPVYIPQP 135



 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 77  RLRRKCEASPVRDRILSSPEP 139
           RLRR+ EA P  +R +  P+P
Sbjct: 141 RLRREPEAEPGNNRPVYIPQP 161


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 113  DRILSSPEPVRLAKRWWRYKNHPGRSTRLQR 205
            DR+ S P P+ +++   R ++    ST+L R
Sbjct: 1392 DRLTSPPTPLSISRAGSRDEDSTRDSTKLDR 1422


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,799
Number of Sequences: 438
Number of extensions: 2484
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)