Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13c12
         (243 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    20   4.4  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    20   4.4  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     19   5.8  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    19   5.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           19   5.8  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    19   5.8  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    19   5.8  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    19   7.7  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 19.8 bits (39), Expect = 4.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 52  KTHPFCTQAQHHKQQA 5
           + +P+ + A HH Q A
Sbjct: 59  RMYPYVSAAHHHHQAA 74


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 19.8 bits (39), Expect = 4.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 52  KTHPFCTQAQHHKQQA 5
           + +P+ + A HH Q A
Sbjct: 59  RMYPYVSAAHHHHQAA 74


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 19.4 bits (38), Expect = 5.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 134 PDRDLKPCICSP 169
           P+ D+K  +CSP
Sbjct: 141 PNCDVKSSVCSP 152


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 19.4 bits (38), Expect = 5.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 134 PDRDLKPCICSP 169
           P+ D+K  +CSP
Sbjct: 141 PNCDVKSSVCSP 152


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 19.4 bits (38), Expect = 5.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 134 PDRDLKPCICSP 169
           P+ D+K  +CSP
Sbjct: 141 PNCDVKSSVCSP 152


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
          protein.
          Length = 284

 Score = 19.4 bits (38), Expect = 5.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 46 HPFCTQAQHHKQQA 5
          +P+ + A HH Q A
Sbjct: 2  YPYVSAAHHHHQAA 15


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
          protein.
          Length = 150

 Score = 19.4 bits (38), Expect = 5.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 46 HPFCTQAQHHKQQA 5
          +P+ + A HH Q A
Sbjct: 2  YPYVSAAHHHHQAA 15


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 19.0 bits (37), Expect = 7.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 137 DRDLKPCICSPLLFLDDTNC 196
           +R  +P  CSP L+    NC
Sbjct: 711 NRLARPANCSPDLYAVMLNC 730


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,431
Number of Sequences: 336
Number of extensions: 784
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 46
effective length of database: 107,129
effective search space used:  3642386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)