Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13c12
         (243 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   1.1  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    23   4.3  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    22   9.9  

>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -1

Query: 210 LHLHTQLVSSKNSKGEHIHGFKSRSG*NHNSHNVF*S*YETLLIKVK*IEEKSKHIHFVR 31
           L + +QL+  KNS    I  +K+      N   +  + YET   +   IEEK K+I    
Sbjct: 90  LSVQSQLLKVKNS----IDSYKNEWSKKTNDAQILLNSYETFCEEEALIEEKLKNIEIFE 145

Query: 30  KH 25
           K+
Sbjct: 146 KN 147


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 79  KSKINRRKIKTHPFC-TQAQHHKQ 11
           + +I  RKI THP C T A+ ++Q
Sbjct: 240 RREIVERKIDTHPGCRTVAERYEQ 263


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 158 ICSPLLFLDDTNC 196
           +CS +L  DD+NC
Sbjct: 199 VCSDVLLNDDSNC 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 784,582
Number of Sequences: 5004
Number of extensions: 11664
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)