Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13c12
         (243 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75537-5|CAA99837.3|  335|Caenorhabditis elegans Hypothetical pr...    26   3.1  
U49829-8|AAV28348.1|  515|Caenorhabditis elegans Hypothetical pr...    26   3.1  
U49829-7|AAA93388.3|  513|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z81498-3|CAB04084.3|  260|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p...    25   5.4  
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr...    25   5.4  
EF445112-1|ABQ01579.1|  265|Caenorhabditis elegans scramblase 4 ...    25   5.4  
Z68341-3|CAA92766.2|  269|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily ass...    25   7.1  
U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily ass...    25   7.1  

>Z75537-5|CAA99837.3|  335|Caenorhabditis elegans Hypothetical
           protein F18E2.4 protein.
          Length = 335

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 114 CVNCGFTLTEI*NRVYALLC 173
           C+ CG TL  + NRV+ +LC
Sbjct: 119 CMACGSTLLLVINRVFDVLC 138


>U49829-8|AAV28348.1|  515|Caenorhabditis elegans Hypothetical
           protein F27D9.8b protein.
          Length = 515

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
 Frame = +2

Query: 59  SSIYFTFINNVSYYD*KTLCELWFYPDRDLKPC-----ICSPLLFLDD 187
           S I F     +S YD  T   +W Y  RDL+       +C  L F DD
Sbjct: 416 SGIVFDIKQGISLYDIPTKSYIWQYRFRDLQAVADDGKLCVQLSFNDD 463


>U49829-7|AAA93388.3|  513|Caenorhabditis elegans Hypothetical
           protein F27D9.8a protein.
          Length = 513

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
 Frame = +2

Query: 59  SSIYFTFINNVSYYD*KTLCELWFYPDRDLKPC-----ICSPLLFLDD 187
           S I F     +S YD  T   +W Y  RDL+       +C  L F DD
Sbjct: 416 SGIVFDIKQGISLYDIPTKSYIWQYRFRDLQAVADDGKLCVQLSFNDD 463


>Z81498-3|CAB04084.3|  260|Caenorhabditis elegans Hypothetical
           protein F11A6.2 protein.
          Length = 260

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
 Frame = +3

Query: 9   CCLWCCACV---QNGCV 50
           CC  CCACV   Q+ CV
Sbjct: 107 CCYGCCACVGCCQHDCV 123


>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
            protein F10F2.1 protein.
          Length = 2507

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 124  QFTQCFLVVV*NVIDKSKINRRKI 53
            Q  +CFL+ + N+  +SK NRR I
Sbjct: 940  QIKKCFLIDIINLCRESKENRRTI 963


>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
            F10F2.1 protein.
          Length = 2507

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 124  QFTQCFLVVV*NVIDKSKINRRKI 53
            Q  +CFL+ + N+  +SK NRR I
Sbjct: 940  QIKKCFLIDIINLCRESKENRRTI 963


>EF445112-1|ABQ01579.1|  265|Caenorhabditis elegans scramblase 4
           protein.
          Length = 265

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
 Frame = +3

Query: 9   CCLWCCACV---QNGCV 50
           CC  CCACV   Q+ CV
Sbjct: 107 CCYGCCACVGCCQHDCV 123


>Z68341-3|CAA92766.2|  269|Caenorhabditis elegans Hypothetical
           protein F01G4.5 protein.
          Length = 269

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 44  MCFDFSSIYFTFINNVSYYD*KTLCELWFY 133
           M +DFS I+F   N    Y  K LC L +Y
Sbjct: 131 MVYDFSQIFFLHFNCFDAYATK-LCYLCYY 159


>U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform b protein.
          Length = 1321

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 12  CLWCCACVQNGCV 50
           C+WC  CV + C+
Sbjct: 185 CIWCGCCVHDTCI 197


>U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform a protein.
          Length = 1372

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 12  CLWCCACVQNGCV 50
           C+WC  CV + C+
Sbjct: 185 CIWCGCCVHDTCI 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,371,800
Number of Sequences: 27780
Number of extensions: 69218
Number of successful extensions: 224
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)