Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13c11
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    50   4e-07
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...    29   0.70 
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...    29   0.70 
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   2.8  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    26   4.9  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   6.5  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    25   8.6  

>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
 Frame = +1

Query: 334 LPVHMRRRVMSHNSKRLPIKL-REAHTKQFKNNGFAVKQKRP--SRKYRRRPQNLL-DEY 501
           LP+   R+ +    KRL  KL +   TK   + G  V       SR        L+  ++
Sbjct: 109 LPIAPSRQRLKRFIKRLRRKLAKSGETKAIDSTGSLVTDNSTDDSRIPSLAAVKLIRGKF 168

Query: 502 NRRQKRHKWLETHIWHAKRFHMIEKWGYRLAYAPCDK 612
             RQ R  WL TH+W  KR HMI  WGY +   P +K
Sbjct: 169 AGRQLRKVWLPTHLWVCKRAHMINAWGYAIPEKPTEK 205



 Score = 48.8 bits (111), Expect = 6e-07
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
 Frame = +1

Query: 247 KFAASRSIEIAAMTESIQRTNHNKL--IFQNLPVHMRRRVMSHNSKRLPIKLREAHTKQF 420
           KF  SRS EI A+ ++++R+  +     FQ LP  +RRR  SHN KR+P  LR+    + 
Sbjct: 42  KFIESRSFEITALQDAMKRSKESSAQRAFQALPRCLRRRAASHNIKRIPKGLRDRALYEM 101

Query: 421 KNNGFAVKQKRPSRKYRRR 477
           + +  +     PSR+  +R
Sbjct: 102 QLSSSSTLPIAPSRQRLKR 120


>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 469 RRRPQNLLDEYNRRQKRHKWLETHIWHAKRFH 564
           RR   + + +YNR +KRHK L  H+  A R +
Sbjct: 84  RREYLHFIPKYNRYEKRHKNLAAHVSPAFRIN 115


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 469 RRRPQNLLDEYNRRQKRHKWLETHIWHAKRFH 564
           RR   + + +YNR +KRHK L  H+  A R +
Sbjct: 84  RREYLHFIPKYNRYEKRHKNLAAHVSPAFRIN 115


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +1

Query: 337  PVHMRRRVMSHNS-KRLPIKLREAHTKQFKNNGFAVKQKRPSRKYRRRPQNLLDEYNRRQ 513
            P+ +   ++   S K L   LR +    F  N  A +      +YR + Q  LDE+   Q
Sbjct: 1040 PISLTIPIIGETSRKELDQFLRNSKVNNFDPNAEAQRHLSYQARYRLKKQERLDEHKEEQ 1099

Query: 514  KR 519
            ++
Sbjct: 1100 EQ 1101


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 358 VMSHNSKRLPIKLREAHTKQFKNNGFAVKQKRPSRKYRRRPQNLLDEY 501
           V+S N + +P KL     K+FK     + +KR     R++P+    EY
Sbjct: 21  VLSKNKENVPGKL----FKKFKCPSLVISEKRKELPLRKKPRVNYSEY 64


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +1

Query: 364 SHNSKRLPIKLREAHTKQFKNNGFAVKQ-KRPSRKYRRRPQNLLDEYNRRQK 516
           SH       KL+   +  F+      K+ K+PS K   RP  L   +N+  K
Sbjct: 265 SHGENESGGKLKNKMSTLFRRKTIMPKKDKKPSHKSNGRPNKLTAFFNKNSK 316


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +1

Query: 400 EAHTKQFKNNGFAVKQKRPSRKYRRRPQNLLDEYNRRQKR 519
           E   ++  N  ++ + + P R Y R  +     Y+RR++R
Sbjct: 227 ELERRRSSNESYSRRSELPRRDYNRHDERERYSYHRRRER 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,899
Number of Sequences: 5004
Number of extensions: 44934
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)