Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13c11
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094...    59   2e-09
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150...    30   1.7  
10_08_0714 + 20081801-20082130,20082205-20082597                       29   2.2  
10_08_0690 - 19913111-19913488,19913585-19913941                       28   5.1  
04_04_1334 - 32723950-32724121,32724527-32724558,32724665-327247...    28   6.7  
04_01_0305 - 4141692-4142912                                           27   8.9  

>11_06_0711 -
           26508228-26508488,26508970-26509084,26509179-26509451,
           26509629-26510197,26510489-26510597,26511002-26511544,
           26511645-26511763,26511893-26512120,26512199-26512315,
           26512410-26512506,26513169-26513569
          Length = 943

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
 Frame = +1

Query: 205 LGGTEQLPFSANSLKFAASRSIEIAAMTESIQRTNHNKLIFQNLPVHMRRRVMSH--NSK 378
           + G    P   +  +FAA+R+ E+ ++ ES+      +L     P   RRR   H  ++K
Sbjct: 1   MAGVPPPPRQLDVRRFAAARAGELRSLHESVSARLAGRL---TQPRSARRRTTGHLPSNK 57

Query: 379 RLPIKLREAHTKQFKNNGFAVKQKRPSRKYRRRPQ---NLLDEYNRRQKRHKWLETHIWH 549
           R   + R+A       +G   ++ RPSR+ RRR +   N  + ++      + L TH+WH
Sbjct: 58  RRRRRSRDAEAA----DGTEEEEGRPSRRVRRRRELAGNTAEGFSAAGDGARRLRTHLWH 113

Query: 550 AKRFHMIEKWGYRL 591
           AKRF M  +WG+ L
Sbjct: 114 AKRFSMERRWGFVL 127


>02_01_0228 +
           1507314-1507566,1507645-1507913,1508010-1508213,
           1508323-1508415,1508509-1508604,1508688-1509032,
           1509123-1509191,1509284-1509367,1509455-1509520,
           1509735-1509800,1509934-1509999,1510097-1510162,
           1510280-1510327,1510406-1510468,1510554-1510619,
           1510782-1510841,1511185-1511232,1511315-1511605
          Length = 750

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +1

Query: 352 RRVMSHNSKRLPIK--LREAHTKQFKNNGFAVKQKRPSRKYRRRPQNLLDEYNRRQKRHK 525
           +R+   N K    K  +  A TK F      ++QK P++KY  R   ++  +  ++K  K
Sbjct: 242 KRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQKDPAKKYPHRA--VVYVHTHKRKSDK 299

Query: 526 WLETHIWHAKR 558
            +  H+ + KR
Sbjct: 300 NINGHVDNLKR 310


>10_08_0714 + 20081801-20082130,20082205-20082597
          Length = 240

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 184 AAEFDATLGGTEQLPFSANSLKFAASRSIEIAAMTESIQRTNHNKLIFQNLPVHMRRRVM 363
           AAE +  L GT   P+ +        + +    + E     N ++L+  + PVH +  VM
Sbjct: 2   AAEGELKLLGTWASPYVSRVKLALHLKGLSYEYVVEEDHFNNKSELLLSSNPVHKKVPVM 61

Query: 364 SHNSK 378
            HN K
Sbjct: 62  IHNGK 66


>10_08_0690 - 19913111-19913488,19913585-19913941
          Length = 244

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +1

Query: 205 LGGTEQLPFSANSLKFAASRSIEIAAMTESIQRTNHNKLIFQNLPVHMRRRVMSHNSKRL 384
           LGG    PF+   +     + +E   + E++ + +  +L+ ++ PVH +  V+ H+SK L
Sbjct: 18  LGGWAS-PFTNRVVVALKLKGVEHEMLQETVGKKS--ELLLRSNPVHKKFPVLLHHSKPL 74

Query: 385 PIKL 396
           P  L
Sbjct: 75  PESL 78


>04_04_1334 -
           32723950-32724121,32724527-32724558,32724665-32724708,
           32724962-32725123,32725984-32726422
          Length = 282

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 77  TKYTYLIKDTIQSILESKGSQIKSIKXXXXXXSRWKQQN 193
           T Y  L    +  IL+SKG  IK  K       +WK++N
Sbjct: 244 TNYIRLFWLGVYRILQSKGGLIKVAKGLIMYGCKWKKEN 282


>04_01_0305 - 4141692-4142912
          Length = 406

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +1

Query: 316 KLIFQNLPVHMRRRVMSHNSKRLPIKLREAHTKQFKNNGFAVKQKRPSRKYRRRPQNLLD 495
           +L+ +N  +   +R  ++ S  L  ++RE   +  K +   VKQ+  +RK      N  D
Sbjct: 89  RLVNENTELSNEKRRAAYVSSTLEYRVRELEHQNTKLSAVLVKQREDTRKAGLLFMNAAD 148

Query: 496 EY 501
            Y
Sbjct: 149 TY 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,644,899
Number of Sequences: 37544
Number of extensions: 262694
Number of successful extensions: 724
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)