Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13c11
         (612 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC011529-1|AAH11529.1| 1024|Homo sapiens processing of precursor...   131   2e-30
D31765-1|BAA06543.1|  903|Homo sapiens KIAA0061 protein.              113   5e-25
BC062683-1|AAH62683.1|  257|Homo sapiens nucleolar protein 7, 27...    31   3.2  
BC023517-1|AAH23517.1|  257|Homo sapiens nucleolar protein 7, 27...    31   3.2  
AL441883-3|CAI19839.1|  257|Homo sapiens nucleolar protein 7, 27...    31   3.2  
AK075301-1|BAC11534.1|  257|Homo sapiens protein ( Homo sapiens ...    31   3.2  
AF172066-1|AAD49745.2|  257|Homo sapiens 27 kDa nucleolar protei...    31   3.2  

>BC011529-1|AAH11529.1| 1024|Homo sapiens processing of precursor 1,
           ribonuclease P/MRP subunit (S. cerevisiae) protein.
          Length = 1024

 Score =  131 bits (317), Expect = 2e-30
 Identities = 64/137 (46%), Positives = 88/137 (64%), Gaps = 2/137 (1%)
 Frame = +1

Query: 208 GGTEQLPFSANSLKFAASRSIEIAAMTESIQRTNHNKLIFQNLPVHMRRRVMSHNSKRLP 387
           G ++++P    +  FA +R+ EI+AM +++ + + N L+FQ LP HMRRR MSHN KRLP
Sbjct: 93  GTSQEIPKYITASTFAQARAAEISAMLKAVTQKSSNSLVFQTLPRHMRRRAMSHNVKRLP 152

Query: 388 IKLREAHTKQFKNNGFAVKQ--KRPSRKYRRRPQNLLDEYNRRQKRHKWLETHIWHAKRF 561
            +L+E   K+ +      K+  K    K RR   N   E+NRRQK++ WLETHIWHAKRF
Sbjct: 153 RRLQEIAQKEAEKAVHQKKEHSKNKCHKARRCHMNRTLEFNRRQKKNIWLETHIWHAKRF 212

Query: 562 HMIEKWGYRLAYAPCDK 612
           HM++KWGY L   P  K
Sbjct: 213 HMVKKWGYCLGERPTVK 229


>D31765-1|BAA06543.1|  903|Homo sapiens KIAA0061 protein.
          Length = 903

 Score =  113 bits (272), Expect = 5e-25
 Identities = 55/108 (50%), Positives = 69/108 (63%), Gaps = 2/108 (1%)
 Frame = +1

Query: 295 IQRTNHNKLIFQNLPVHMRRRVMSHNSKRLPIKLREAHTKQFKNNGFAVKQ--KRPSRKY 468
           + + + N L+FQ LP HMRRR MSHN KRLP +L+E   K+ +      K+  K    K 
Sbjct: 1   VTQKSSNSLVFQTLPRHMRRRAMSHNVKRLPRRLQEIAQKEAEKAVHQKKEHSKNKCHKA 60

Query: 469 RRRPQNLLDEYNRRQKRHKWLETHIWHAKRFHMIEKWGYRLAYAPCDK 612
           RR   N   E+NRRQK++ WLETHIWHAKRFHM++KWGY L   P  K
Sbjct: 61  RRCHMNRTLEFNRRQKKNIWLETHIWHAKRFHMVKKWGYCLGERPTVK 108


>BC062683-1|AAH62683.1|  257|Homo sapiens nucleolar protein 7, 27kDa
           protein.
          Length = 257

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 19/63 (30%), Positives = 35/63 (55%)
 Frame = +1

Query: 289 ESIQRTNHNKLIFQNLPVHMRRRVMSHNSKRLPIKLREAHTKQFKNNGFAVKQKRPSRKY 468
           ++ Q   HN L           + +S  +KRLP+K R A   QF NN + +++K+ ++++
Sbjct: 188 QAAQAFIHNSLYGPGTNRTTVNKFLSLANKRLPVK-RAA--VQFLNNAWGIQKKQNAKRF 244

Query: 469 RRR 477
           +RR
Sbjct: 245 KRR 247


>BC023517-1|AAH23517.1|  257|Homo sapiens nucleolar protein 7, 27kDa
           protein.
          Length = 257

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 19/63 (30%), Positives = 35/63 (55%)
 Frame = +1

Query: 289 ESIQRTNHNKLIFQNLPVHMRRRVMSHNSKRLPIKLREAHTKQFKNNGFAVKQKRPSRKY 468
           ++ Q   HN L           + +S  +KRLP+K R A   QF NN + +++K+ ++++
Sbjct: 188 QAAQAFIHNSLYGPGTNRTTVNKFLSLANKRLPVK-RAA--VQFLNNAWGIQKKQNAKRF 244

Query: 469 RRR 477
           +RR
Sbjct: 245 KRR 247


>AL441883-3|CAI19839.1|  257|Homo sapiens nucleolar protein 7, 27kDa
           protein.
          Length = 257

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 19/63 (30%), Positives = 35/63 (55%)
 Frame = +1

Query: 289 ESIQRTNHNKLIFQNLPVHMRRRVMSHNSKRLPIKLREAHTKQFKNNGFAVKQKRPSRKY 468
           ++ Q   HN L           + +S  +KRLP+K R A   QF NN + +++K+ ++++
Sbjct: 188 QAAQAFIHNSLYGPGTNRTTVNKFLSLANKRLPVK-RAA--VQFLNNAWGIQKKQNAKRF 244

Query: 469 RRR 477
           +RR
Sbjct: 245 KRR 247


>AK075301-1|BAC11534.1|  257|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90820 fis, clone Y79AA1001272. ).
          Length = 257

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 19/63 (30%), Positives = 35/63 (55%)
 Frame = +1

Query: 289 ESIQRTNHNKLIFQNLPVHMRRRVMSHNSKRLPIKLREAHTKQFKNNGFAVKQKRPSRKY 468
           ++ Q   HN L           + +S  +KRLP+K R A   QF NN + +++K+ ++++
Sbjct: 188 QAAQAFIHNSLYGPGTNRTTVNKFLSLANKRLPVK-RAA--VQFLNNAWGIQKKQNAKRF 244

Query: 469 RRR 477
           +RR
Sbjct: 245 KRR 247


>AF172066-1|AAD49745.2|  257|Homo sapiens 27 kDa nucleolar protein
           protein.
          Length = 257

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 19/63 (30%), Positives = 35/63 (55%)
 Frame = +1

Query: 289 ESIQRTNHNKLIFQNLPVHMRRRVMSHNSKRLPIKLREAHTKQFKNNGFAVKQKRPSRKY 468
           ++ Q   HN L           + +S  +KRLP+K R A   QF NN + +++K+ ++++
Sbjct: 188 QAAQAFIHNSLYGPGTNRTTVNKFLSLANKRLPVK-RAA--VQFLNNAWGIQKKQNAKRF 244

Query: 469 RRR 477
           +RR
Sbjct: 245 KRR 247


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,866,548
Number of Sequences: 237096
Number of extensions: 1488960
Number of successful extensions: 6667
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6665
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)