Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13c11
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-7|AAB53831.2|  752|Caenorhabditis elegans Hypothetical pr...    77   1e-14
AF016684-11|AAB66215.1|  555|Caenorhabditis elegans Hypothetical...    29   2.6  
Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z81098-1|CAB03183.1|  581|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>U00048-7|AAB53831.2|  752|Caenorhabditis elegans Hypothetical
           protein C05D11.9 protein.
          Length = 752

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 9/125 (7%)
 Frame = +1

Query: 247 KFAASRSIEIAAMTESIQR--------TNHNKLIFQNLPVHMRRRVMSHNSKRLPIKLRE 402
           KF  +R+  IA + ++I          T   +   Q LP HMRRR M+++ +R P  +RE
Sbjct: 7   KFVEARTNSIAQLLKAIDNDALVSGEVTKGPRTAAQRLPRHMRRRAMAYDIRRFPRTMRE 66

Query: 403 AHTKQFKNNGFAVKQKRPSRKYRRRPQNLLDEYNRRQK-RHKWLETHIWHAKRFHMIEKW 579
                  +      +K PSR  RR+  N   ++ R    +  WL TH+WHAKRF MI+KW
Sbjct: 67  FAAAHLISKH---AKKCPSRFARRKSANSRTKFGRSTSTKGIWLSTHVWHAKRFRMIQKW 123

Query: 580 GYRLA 594
           G++LA
Sbjct: 124 GFKLA 128


>AF016684-11|AAB66215.1|  555|Caenorhabditis elegans Hypothetical
           protein F45C12.5 protein.
          Length = 555

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = -2

Query: 557 LFACHICVSNHLWRFCRRLYSSNRFCGRRLYFLEG----RFCFTANPLF 423
           +FAC + +  HL  + R+ YS   FC +R     G       FT N +F
Sbjct: 409 VFACVLGILLHLRFYKRKQYSIESFCSKRYLMAAGMLFINVLFTGNSIF 457


>Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical
           protein F01D4.7 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 450 FLLYSKPVIFKLLCMSFS 397
           F L++ P+IF +LCM FS
Sbjct: 105 FALFNLPLIFSMLCMEFS 122


>Z81098-1|CAB03183.1|  581|Caenorhabditis elegans Hypothetical
           protein K07A12.1 protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 484 NLLDEYNRRQKRHKWLETHIWHAKRF---HMIEKWGYRLAYA 600
           +L+D +  + K+++W+      AK+F   H++  W Y +A A
Sbjct: 269 SLIDIFALKAKQYQWIINTFEAAKKFKKLHLLPNWPYSVALA 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,019,089
Number of Sequences: 27780
Number of extensions: 245954
Number of successful extensions: 737
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)