Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13c06
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         27   2.4  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   3.2  
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    25   7.4  

>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 289 NHKLSRLHRRTAVLKLWIHQYFYHTHRLT 375
           N+ LS LH       L++ + +YHTH LT
Sbjct: 57  NYALSILHNICLASFLYLSKCYYHTHILT 85


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 330 EIMDPSIFLP--YAPPNGLPQESKLVTYMSRSTSTP--TRSLNHAIGKLTLDSSPP 485
           E  D  I LP     P      S+   +  R  + P  T +L+H  GKL +DS PP
Sbjct: 119 EARDQGITLPSYMRHPRLFDLSSEYAKWQIRMGAVPPYTITLSHIFGKLDVDSLPP 174


>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 364 AYGRNIDGSIISKLQCVCAVCLIYDSFRF 278
           A   ++D  I+SKL  +  + L YD+ RF
Sbjct: 28  AIQEHMDSMILSKLPRINGIVLAYDNIRF 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,348
Number of Sequences: 5004
Number of extensions: 56051
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)