Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13c06
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0210 - 15874289-15875663,15878248-15879263                       29   2.5  
02_01_0522 + 3779404-3779439,3779594-3779709,3780120-3780327,378...    29   2.5  
04_04_0918 - 29411239-29411373,29412276-29412526,29412772-294130...    29   4.4  
07_01_0352 - 2550656-2550659,2550660-2551195                           28   7.7  
03_06_0742 + 35900505-35900519,35901230-35901281,35901647-359017...    28   7.7  

>10_08_0210 - 15874289-15875663,15878248-15879263
          Length = 796

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 568 LRVHHHLLYQWRMLQL-SIRRTWEETTYFYS 657
           + +HH + + W +L L   +  WE TTY +S
Sbjct: 385 VHIHHGVYFTWVILSLLGAKEIWEMTTYVFS 415


>02_01_0522 +
           3779404-3779439,3779594-3779709,3780120-3780327,
           3781446-3781611,3781713-3781842,3782496-3782619,
           3782794-3782844,3783140-3783262,3783504-3783602,
           3783680-3783790,3783868-3783957,3784035-3784175,
           3787913-3788116,3788154-3788290,3788429-3788662,
           3789535-3789829,3789963-3790017,3790144-3790245,
           3790581-3790669,3790807-3790899
          Length = 867

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +1

Query: 526 TTMFRHRICFPQNHLRV----HHHLLYQWRMLQLSIRRTWEETTY 648
           +TM  H I   Q   ++    HH LL  +  L   IR TW+E+ Y
Sbjct: 642 STMLDHFINILQKDFKIGYIQHHPLLQDFNQLSNMIRMTWKESKY 686


>04_04_0918 -
           29411239-29411373,29412276-29412526,29412772-29413009,
           29413133-29414251,29414540-29415106
          Length = 769

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 3   LFNVSIVFVSPSLRVREFCIKIAAPVFC-VNESIKIAFK 116
           L ++ +   S    +REFC++ A+ VFC V+ S KI+ K
Sbjct: 478 LSSLKLPITSSKRTIREFCMESASIVFCTVSSSSKISNK 516


>07_01_0352 - 2550656-2550659,2550660-2551195
          Length = 179

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +3

Query: 378 LPQESKLVTYMSRSTSTPTRSLNHAIGKLTLDSSPPGVKKVLVSEFIP 521
           LPQE +  +++S   S P   L    GK  L S  PG+  +    F P
Sbjct: 29  LPQEEEYESFVSSLPSNPKLQLLRYQGKWLLQSWVPGIIAIQRGGFAP 76


>03_06_0742 +
           35900505-35900519,35901230-35901281,35901647-35901772,
           35902303-35902613,35902745-35902988,35903726-35903976,
           35904071-35904277,35904546-35904713,35904798-35905127,
           35905266-35905400
          Length = 612

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 417 STSTPTRSLNHAIGKLT--LDSSPPGVKKVLVSEFIP 521
           S+S PT+    A   L   LD +PPG +++L  +F P
Sbjct: 361 SSSQPTKEQQEAADNLVKMLDLAPPGREEILKPDFTP 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,262,798
Number of Sequences: 37544
Number of extensions: 338406
Number of successful extensions: 767
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)