Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13b17
         (667 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-3757|AAG22453.3|  237|Drosophila melanogaster CG17521-P...   428   e-120
AE014296-3758|AAF45440.2|  231|Drosophila melanogaster CG17521-P...   427   e-120
U49721-1|AAC16108.1|  218|Drosophila melanogaster QM homolog pro...   426   e-119
AY070910-1|AAL48532.1|  218|Drosophila melanogaster RE02339p pro...   426   e-119
BT003580-1|AAO39584.1|  197|Drosophila melanogaster LD24589p pro...   214   1e-55
BT011380-1|AAR96172.1| 1233|Drosophila melanogaster LP07472p pro...    30   3.3  
AY047535-1|AAK77267.1|  640|Drosophila melanogaster GH04440p pro...    30   3.3  
AE013599-782|AAF58990.2| 1233|Drosophila melanogaster CG8777-PA ...    30   3.3  
AE014296-3425|AAF51645.2|  926|Drosophila melanogaster CG3680-PA...    29   7.5  

>AE014296-3757|AAG22453.3|  237|Drosophila melanogaster CG17521-PB,
           isoform B protein.
          Length = 237

 Score =  428 bits (1055), Expect = e-120
 Identities = 196/224 (87%), Positives = 209/224 (93%), Gaps = 3/224 (1%)
 Frame = +3

Query: 3   FSRL--WCHFVK-ITMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDD 173
           FSR+  W   V  + MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLG+K+ATV+D
Sbjct: 5   FSRVLRWKRLVSGVEMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVED 64

Query: 174 FPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 353
           FPLCVHLVSDEYEQLSSEALEAGRICCNKYLVK CGKDQFHIRMRLHPFHVIRINKMLSC
Sbjct: 65  FPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSC 124

Query: 354 AGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKI 533
           AGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDR+KAQVIEALRRAKFKFPGRQKI
Sbjct: 125 AGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKI 184

Query: 534 YVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDAW 665
           YVSKKWGFTKYER+ +E+LR++ RL  DGC V+YRPEHGP+ AW
Sbjct: 185 YVSKKWGFTKYERERYEELRDDNRLEPDGCNVKYRPEHGPIAAW 228


>AE014296-3758|AAF45440.2|  231|Drosophila melanogaster CG17521-PA,
           isoform A protein.
          Length = 231

 Score =  427 bits (1051), Expect = e-120
 Identities = 191/211 (90%), Positives = 203/211 (96%)
 Frame = +3

Query: 33  ITMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYE 212
           + MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLG+K+ATV+DFPLCVHLVSDEYE
Sbjct: 12  VEMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYE 71

Query: 213 QLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGA 392
           QLSSEALEAGRICCNKYLVK CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGA
Sbjct: 72  QLSSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGA 131

Query: 393 FGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER 572
           FGKPQGTVARVRIGQPIMSVRSSDR+KAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER
Sbjct: 132 FGKPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER 191

Query: 573 DEFEKLREEGRLANDGCIVQYRPEHGPLDAW 665
           + +E+LR++ RL  DGC V+YRPEHGP+ AW
Sbjct: 192 ERYEELRDDNRLEPDGCNVKYRPEHGPIAAW 222


>U49721-1|AAC16108.1|  218|Drosophila melanogaster QM homolog
           protein.
          Length = 218

 Score =  426 bits (1049), Expect = e-119
 Identities = 191/209 (91%), Positives = 202/209 (96%)
 Frame = +3

Query: 39  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 218
           MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLG+K+ATV+DFPLCVHLVSDEYEQL
Sbjct: 1   MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQL 60

Query: 219 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 398
           SSEALEAGRICCNKYLVK CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120

Query: 399 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 578
           KPQGTVARVRIGQPIMSVRSSDR+KAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER+ 
Sbjct: 121 KPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERER 180

Query: 579 FEKLREEGRLANDGCIVQYRPEHGPLDAW 665
           +E+LR++ RL  DGC V+YRPEHGP+ AW
Sbjct: 181 YEELRDDNRLEPDGCNVKYRPEHGPIAAW 209


>AY070910-1|AAL48532.1|  218|Drosophila melanogaster RE02339p
           protein.
          Length = 218

 Score =  426 bits (1049), Expect = e-119
 Identities = 191/209 (91%), Positives = 202/209 (96%)
 Frame = +3

Query: 39  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 218
           MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLG+K+ATV+DFPLCVHLVSDEYEQL
Sbjct: 1   MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQL 60

Query: 219 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 398
           SSEALEAGRICCNKYLVK CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120

Query: 399 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 578
           KPQGTVARVRIGQPIMSVRSSDR+KAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER+ 
Sbjct: 121 KPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERER 180

Query: 579 FEKLREEGRLANDGCIVQYRPEHGPLDAW 665
           +E+LR++ RL  DGC V+YRPEHGP+ AW
Sbjct: 181 YEELRDDNRLEPDGCNVKYRPEHGPIAAW 209


>BT003580-1|AAO39584.1|  197|Drosophila melanogaster LD24589p
           protein.
          Length = 197

 Score =  214 bits (522), Expect = 1e-55
 Identities = 123/213 (57%), Positives = 141/213 (66%), Gaps = 2/213 (0%)
 Frame = +3

Query: 33  ITMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYE 212
           + MGRRPARCYRY           C+  P PK R F  G     +  F L          
Sbjct: 5   VEMGRRPARCYRY-----------CKNKPYPKSR-FCRGVPDPKIRIFDL---------- 42

Query: 213 QLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRI--NKMLSCAGADRLQTGMR 386
                 +E   +C   +LV     D++  ++        RI  NKMLSCAGADRLQTGMR
Sbjct: 43  GRKKATVEDFPLCV--HLVS----DEYE-QLSSEALEAGRICCNKMLSCAGADRLQTGMR 95

Query: 387 GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKY 566
           GAFGKPQGTVARVRIGQPIMSVRSSDR+KAQVIEALRRAKFKFPGRQKIYVSKKWGFTKY
Sbjct: 96  GAFGKPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKY 155

Query: 567 ERDEFEKLREEGRLANDGCIVQYRPEHGPLDAW 665
           ER+ +E+LR++ RL  DGC V+YRPEHGP+ AW
Sbjct: 156 ERERYEELRDDNRLEPDGCNVKYRPEHGPIAAW 188


>BT011380-1|AAR96172.1| 1233|Drosophila melanogaster LP07472p protein.
          Length = 1233

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 6    SRLWCHFVKITMGRRPARCYRYCKNKPYPKSRFCRGV 116
            S L  H++ I  G R A CY   + + +P SR  R V
Sbjct: 1107 SYLTAHYILINEGARRALCYLQTRIRMFPNSRSLRSV 1143


>AY047535-1|AAK77267.1|  640|Drosophila melanogaster GH04440p
           protein.
          Length = 640

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 6   SRLWCHFVKITMGRRPARCYRYCKNKPYPKSRFCRGV 116
           S L  H++ I  G R A CY   + + +P SR  R V
Sbjct: 514 SYLTAHYILINEGARRALCYLQTRIRMFPNSRSLRSV 550


>AE013599-782|AAF58990.2| 1233|Drosophila melanogaster CG8777-PA
            protein.
          Length = 1233

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 6    SRLWCHFVKITMGRRPARCYRYCKNKPYPKSRFCRGV 116
            S L  H++ I  G R A CY   + + +P SR  R V
Sbjct: 1107 SYLTAHYILINEGARRALCYLQTRIRMFPNSRSLRSV 1143


>AE014296-3425|AAF51645.2|  926|Drosophila melanogaster CG3680-PA
           protein.
          Length = 926

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 237 PPKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQVHPDRTS 97
           PPK  S+    +RTP+         + S+   R   SWD V+  R S
Sbjct: 544 PPKKESAQSAAKRTPADSVFTKATANTSARKPRASDSWDYVYKQRAS 590


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,964,933
Number of Sequences: 53049
Number of extensions: 818452
Number of successful extensions: 2585
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2584
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2868730650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)