Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13b14
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.57 
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   7.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.3  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   9.3  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   9.3  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 557 HLRSVRFDFANALL-VCRPVAEHIYCKQLFVLLLPSSPITITLEITF 694
           H RS R  F    +   R VA H Y K+L + L+    +  T+ +TF
Sbjct: 132 HYRSKRRGFVYYTMGQIREVARHFYHKELQIELVREEILFDTVHVTF 178


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 244 FVEIGYFFAIFYNCVPRSNRVILQV 170
           F+ I YF  +++N + R  R  +++
Sbjct: 16  FILINYFIFLYFNSLVRFRRFTIEL 40


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 252 LIFSSRLDIFLPFF 211
           LIFSS +  +LP F
Sbjct: 207 LIFSSTISFYLPLF 220


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 158 MMLSNLQNNTIRTWDAVVKNGKKI 229
           M+ +    N +  WD  VKN + I
Sbjct: 76  MIATKAMKNDVILWDFFVKNARMI 99


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 158 MMLSNLQNNTIRTWDAVVKNGKKI 229
           M+ +    N +  WD  VKN + I
Sbjct: 50  MIATKAMKNDVILWDFFVKNARMI 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,379
Number of Sequences: 438
Number of extensions: 3740
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)