Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13b06
         (396 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       29   0.022
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    26   0.16 
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    23   1.5  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   2.5  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   3.4  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   3.4  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    20   7.7  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 0.022
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 193 CPKCYFVTSSEVSVAEYIEMHKNFNTKFADRCPNDFIVINSKSWNNH 333
           CPKC F+T  +  +  ++  H        ++C  D+  +N    N+H
Sbjct: 233 CPKCPFITEYKHHLEYHLRNHAGSKPFQCNKC--DYTCVNKSMLNSH 277


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 25.8 bits (54), Expect = 0.16
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 201 VLFCDVVRSERG*IHRNA*KF*HK 272
           ++ CD VRSE   + +NA K  HK
Sbjct: 254 IIMCDCVRSEASKVVKNAQKLRHK 277


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +3

Query: 48  TTYDVVGKRDYNKFDKLVKKY*HVAINHTTF----QEYKQSQQKAFRSLCS 188
           T YD +   +  K D+L+K Y +  +   T     +E K++   A  S CS
Sbjct: 26  TKYDNIDLEEILKSDRLLKNYFNCLMERGTCSPDGEELKKALPDALHSGCS 76


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 394 FFLQTTNFINTQGKIGQNNFHDYSN 320
           F+L+ T+      ++  NNF  YSN
Sbjct: 87  FYLEATDDFAYFLEVSNNNFKTYSN 111


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/35 (22%), Positives = 22/35 (62%)
 Frame = +3

Query: 93  KLVKKY*HVAINHTTFQEYKQSQQKAFRSLCSVMS 197
           +L++K+  V +    ++  K  ++K + ++C++MS
Sbjct: 287 QLIEKWSRVEMALDNWKNDKSLKRKFYLTICTIMS 321


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 257 LCISMYSATLTSD 219
           LC++MY  +LT D
Sbjct: 264 LCLTMYKLSLTED 276



 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 272 FVLKFLCISMYSATLTSD 219
           F+L F CIS+    +++D
Sbjct: 169 FILAFACISIAYTNVSTD 186


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 97  W*KNIDMLRSIIRRFKST 150
           W K++ + + I+  FKST
Sbjct: 15  WGKSLSIPQQILNEFKST 32


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,913
Number of Sequences: 336
Number of extensions: 1966
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)