Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13b06
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    25   4.3  
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    25   4.3  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   4.3  
SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr 1||...    24   7.4  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    24   7.4  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    24   9.8  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    24   9.8  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    24   9.8  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    24   9.8  

>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 188 CYVQSVIL*RRPK*AWLNT*KCIKILTQNSP 280
           C+++ V + RR + +WLN  + +K+   + P
Sbjct: 21  CFIKGVSVMRRRRDSWLNATQILKVADFDKP 51


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 157 LSKKPSDHYVVLC 195
           L K P DHY++LC
Sbjct: 92  LPKVPRDHYIILC 104


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 306 YNKIVRAPIGEFCVKIFMHFYVFSH 232
           + +I  AP   F  K  +H+Y+F H
Sbjct: 225 FKEINNAPFPNFISKEILHYYLFIH 249


>SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 289

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/50 (24%), Positives = 19/50 (38%)
 Frame = +1

Query: 130 IRRFKSTNNLSKKPSDHYVVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFA 279
           + R    NNL K     Y++    CY     E++    +E     +  FA
Sbjct: 181 VARASVQNNLLKWSVKDYLLKAGLCYMANGDEIATRRALEHFLEIDPSFA 230


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = +3

Query: 42  QHTTYDVVGKRDYNKFDKLVKKY*HVAINHTTFQEYKQSQQKAFRSLCSVMSKVLFCDVV 221
           + T Y ++ +   N+F    K     + +HT F  Y   +    + +C     +   D+ 
Sbjct: 666 EDTVYKMLNRAGENRFIAATKANERSSRSHTVFMLYIDGENSRTKQICK--GTLNLVDLA 723

Query: 222 RSER 233
            SER
Sbjct: 724 GSER 727


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 258 FMHFYVFSHAHFGRRHKITL 199
           F  F VFS  ++G RHK T+
Sbjct: 289 FTFFAVFSVINYGFRHKFTV 308


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 258 FMHFYVFSHAHFGRRHKITL 199
           F  F VFS  ++G RHK T+
Sbjct: 289 FTFFAVFSVINYGFRHKFTV 308


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 258 FMHFYVFSHAHFGRRHKITL 199
           F  F VFS  ++G RHK T+
Sbjct: 289 FTFFAVFSVINYGFRHKFTV 308


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 258 FMHFYVFSHAHFGRRHKITL 199
           F  F VFS  ++G RHK T+
Sbjct: 289 FTFFAVFSVINYGFRHKFTV 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,595,008
Number of Sequences: 5004
Number of extensions: 29616
Number of successful extensions: 74
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)