Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13b06
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-8|CAB02113.1|  270|Caenorhabditis elegans Hypothetical pr...    31   0.30 
AF169201-1|AAF01678.1|  270|Caenorhabditis elegans CES-1 protein.      31   0.30 
AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical ...    29   1.2  
AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical ...    29   1.2  
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical ...    27   3.7  
AF063007-1|AAC16430.2|  730|Caenorhabditis elegans Hypothetical ...    27   4.9  
Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical pr...    26   8.5  
U64600-2|AAK39200.2|  519|Caenorhabditis elegans Twik family of ...    26   8.5  
AF083653-1|AAC32864.1|  484|Caenorhabditis elegans putative pota...    26   8.5  
AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical...    26   8.5  

>Z79755-8|CAB02113.1|  270|Caenorhabditis elegans Hypothetical
           protein F43G9.11 protein.
          Length = 270

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = +1

Query: 109 IDMLRSIIRRFKSTNNLSKK-PSDHYVVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADR 285
           +D L+++ RR     +L+KK PS H   +C KC    ++  +++ + + H+  ++  A +
Sbjct: 112 LDSLQNLDRR-----SLNKKGPSSHNRCVCDKCGKSYATTSNLSRHKQTHRALDSPHAKQ 166

Query: 286 CPN-DFIVINSKSWNNH 333
           CP+ D + ++  + + H
Sbjct: 167 CPHCDRVYVSMPALSMH 183


>AF169201-1|AAF01678.1|  270|Caenorhabditis elegans CES-1 protein.
          Length = 270

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = +1

Query: 109 IDMLRSIIRRFKSTNNLSKK-PSDHYVVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADR 285
           +D L+++ RR     +L+KK PS H   +C KC    ++  +++ + + H+  ++  A +
Sbjct: 112 LDSLQNLDRR-----SLNKKGPSSHNRCVCDKCGKSYATTSNLSRHKQTHRALDSPHAKQ 166

Query: 286 CPN-DFIVINSKSWNNH 333
           CP+ D + ++  + + H
Sbjct: 167 CPHCDRVYVSMPALSMH 183


>AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5a protein.
          Length = 582

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 390 FYKQQTLLIHRVK*GRTIFMIIPTFRINYNKIVRAPIGEFCVKIFMHF 247
           F +++ +  H  K    IF ++  F+INY K +++P+  F   +F  F
Sbjct: 484 FGRKKNMRHHFQKVYFDIFELLIFFKINYQKSIKSPVSVFSNYLFFGF 531


>AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5c protein.
          Length = 471

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 390 FYKQQTLLIHRVK*GRTIFMIIPTFRINYNKIVRAPIGEFCVKIFMHF 247
           F +++ +  H  K    IF ++  F+INY K +++P+  F   +F  F
Sbjct: 373 FGRKKNMRHHFQKVYFDIFELLIFFKINYQKSIKSPVSVFSNYLFFGF 420


>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
           protein C09H6.1b protein.
          Length = 1309

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 193 CPKCYFVTSSEVSVAEYIEMHKNFNTKFA-DRCPNDFIVINSKSWNNHEN 339
           C KC     S+ S+A + +MH     KFA + C  DF     KS  +H N
Sbjct: 114 CHKCPSRYESKSSLANHTKMHLGEKRKFACELC--DFSASTLKSLTHHNN 161


>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
           protein C09H6.1a protein.
          Length = 1311

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 193 CPKCYFVTSSEVSVAEYIEMHKNFNTKFA-DRCPNDFIVINSKSWNNHEN 339
           C KC     S+ S+A + +MH     KFA + C  DF     KS  +H N
Sbjct: 114 CHKCPSRYESKSSLANHTKMHLGEKRKFACELC--DFSASTLKSLTHHNN 161


>AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical
           protein C09E7.4 protein.
          Length = 640

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 130 IRRFKSTNNLSKKPSDHYVVLCPKCYFVTSSEVSVAEYIEMHKNFNTK 273
           +RR K T  LSK P+DHY           +  +S+ + IE  K+   K
Sbjct: 353 LRRKKDTYKLSKLPADHYTAPWSSVSQTCADILSMKKEIEKIKDPTVK 400


>AF063007-1|AAC16430.2|  730|Caenorhabditis elegans Hypothetical
           protein R119.1 protein.
          Length = 730

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +1

Query: 79  TINLTNW*KNIDMLRSIIRRFKSTNNLSKKPSDHYVV 189
           T+ L+NW + +   R +IR  +S++  S +PS ++++
Sbjct: 320 TLGLSNWVRKV---RDVIRSIQSSDTHSSRPSGNFLL 353


>Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical
           protein F23D12.5 protein.
          Length = 867

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 391 FLQTTNFINTQGKIGQNNFHDYSN 320
           F +TT F NT GKI +N   +Y+N
Sbjct: 374 FDETTKF-NTDGKIEENTSEEYTN 396


>U64600-2|AAK39200.2|  519|Caenorhabditis elegans Twik family of
           potassium channelsprotein 26 protein.
          Length = 519

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 348 GRTIFMIIPTFRINYNKIVRAPIGEFCVKIFMHFYVF 238
           GRT+ MI  +  +    +V   IGE+  KI  + Y+F
Sbjct: 213 GRTLSMIYASIGLPIMLVVLGDIGEWFQKILTNGYIF 249


>AF083653-1|AAC32864.1|  484|Caenorhabditis elegans putative
           potassium channel subunitn2P26 protein.
          Length = 484

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 348 GRTIFMIIPTFRINYNKIVRAPIGEFCVKIFMHFYVF 238
           GRT+ MI  +  +    +V   IGE+  KI  + Y+F
Sbjct: 178 GRTLSMIYASIGLPIMLVVLGDIGEWFQKILTNGYIF 214


>AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical
           protein C02E7.1 protein.
          Length = 1050

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 163 KKPSDHYVVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADR 285
           K P+D  V+ C   Y  TSS    AE +E    FN+  AD+
Sbjct: 197 KVPADIRVIACTDFYLETSSITGEAEPLE----FNSAMADQ 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,875,556
Number of Sequences: 27780
Number of extensions: 171207
Number of successful extensions: 494
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)