Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13b06
(396 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 0.55
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 0.55
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 0.55
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 21 5.1
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 21 5.1
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 21 5.1
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 21 5.1
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 21 6.8
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 21 6.8
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 21 6.8
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 20 9.0
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 0.55
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 101 EKILTCCDQSY-DVSRVQTISAKSL 172
EK TCCD+ Y D++ T+ K+L
Sbjct: 221 EKFYTCCDEPYLDITFNITMRRKTL 245
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 0.55
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 101 EKILTCCDQSY-DVSRVQTISAKSL 172
EK TCCD+ Y D++ T+ K+L
Sbjct: 221 EKFYTCCDEPYLDITFNITMRRKTL 245
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 24.2 bits (50), Expect = 0.55
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 101 EKILTCCDQSY-DVSRVQTISAKSL 172
EK TCCD+ Y D++ T+ K+L
Sbjct: 217 EKFYTCCDEPYLDITFNITMRRKTL 241
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.0 bits (42), Expect = 5.1
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 310 NSKSWNNHENCSALFYPV 363
N K++NN+ N L+Y +
Sbjct: 310 NYKNYNNNYNSKKLYYNI 327
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.0 bits (42), Expect = 5.1
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 310 NSKSWNNHENCSALFYPV 363
N K++NN+ N L+Y +
Sbjct: 321 NYKNYNNNYNSKKLYYNI 338
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.0 bits (42), Expect = 5.1
Identities = 7/36 (19%), Positives = 18/36 (50%)
Frame = +3
Query: 72 RDYNKFDKLVKKY*HVAINHTTFQEYKQSQQKAFRS 179
R Y K +K+ +H + ++ +QK++++
Sbjct: 250 RQYEKLHNEKEKFLEERTSHKRYSRSREREQKSYKN 285
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 21.0 bits (42), Expect = 5.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 30 NKVGQHTTYDVVGKRDY 80
NKV H YD++ K D+
Sbjct: 237 NKVIIHPKYDIIEKDDW 253
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 20.6 bits (41), Expect = 6.8
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = -3
Query: 250 FLCIQPRSLRTTSQNNTLDITLHNDRKAFC 161
++ + +SLRT S +++ + N FC
Sbjct: 75 YIFLSTKSLRTPSNLFVINLAISNFLMMFC 104
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 6.8
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +1
Query: 310 NSKSWNNHENCSALFYPV 363
N+ +N + NC L+Y +
Sbjct: 94 NNYKYNYNNNCKKLYYNI 111
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 20.6 bits (41), Expect = 6.8
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = -3
Query: 118 TCQYFFTNLSNLL*SRLPTTSYVVCWPTL 32
TC + ++ +L T +Y C PTL
Sbjct: 189 TCDFTRDKVAPILVRARETPNYTACPPTL 217
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 20.2 bits (40), Expect = 9.0
Identities = 6/39 (15%), Positives = 16/39 (41%)
Frame = +1
Query: 193 CPKCYFVTSSEVSVAEYIEMHKNFNTKFADRCPNDFIVI 309
CP+C+ + + + ++ +H C F+ +
Sbjct: 12 CPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQV 50
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,497
Number of Sequences: 438
Number of extensions: 2210
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 9761793
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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