Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13b01
         (721 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...   107   9e-26
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    28   0.066
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    25   0.62 
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    23   3.3  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score =  107 bits (257), Expect = 9e-26
 Identities = 60/195 (30%), Positives = 105/195 (53%)
 Frame = +2

Query: 137 EIKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDR 316
           EIKL    P  +RPY +    +  V   I ++L  G+I+   S YASP+ + KKKDG+ R
Sbjct: 297 EIKLHDKTPFLKRPYPVPFALRPAVDATIQEMLDLGVIKREASPYASPMTVGKKKDGTVR 356

Query: 317 MCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAF 496
           +C+D R +NS  + +    P  D+ + +  +  + +++D+ + + Q+PL  + S   TAF
Sbjct: 357 ICLDARMINSKMIADCESPPAADELLRRFHEIRYMSTIDLRSSYWQIPLSPE-SRQYTAF 415

Query: 497 VTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNN 676
           +     + Y  +P+GL  A   + R +   L   +    V+ Y+DD+L+ S T+ E L +
Sbjct: 416 LYNGRSYTYQVLPFGLKTAVGSFSRAMDVVLGTEV-REFVVNYIDDLLVASETLNEHLEH 474

Query: 677 LREVLQTLASAGFSV 721
           LR+V + L  A  ++
Sbjct: 475 LRQVFEKLKQARMTI 489


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 0.066
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 211 NPIFFVYGKPIRSLIYRNIGF*LNLHATRIY--CGCCRSINKGILKFGYQI 65
           +PIF +    + S+ Y  IG  LN H  R Y  CG    +    + FGY I
Sbjct: 499 SPIFIIIPVTLTSVCYFMIG--LNSHGFRFYIACGIMILVANVAISFGYLI 547


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 182 RLSIDEKNRVRNIINDLLAKGIIR 253
           RLS+D+ +R R+ I D +  G++R
Sbjct: 302 RLSLDDMDRWRDRIYDAIHSGVVR 325


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 454 LVKSCGHVETSEKYVFTKFVDV 389
           LV +C HV   E+YV    +D+
Sbjct: 7   LVLTCAHVVFLEEYVIPDNIDI 28


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,558
Number of Sequences: 336
Number of extensions: 3505
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)