Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13b01
(721 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 117 2e-27
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 117 2e-27
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 117 2e-27
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 117 2e-27
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 117 2e-27
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 117 2e-27
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 117 2e-27
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 117 2e-27
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 115 8e-27
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 115 8e-27
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 115 8e-27
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy... 29 0.88
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 28 1.5
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces... 26 6.2
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 117 bits (281), Expect = 2e-27
Identities = 66/183 (36%), Positives = 104/183 (56%)
Frame = +2
Query: 173 RPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVDYRALNSIT 352
R Y L + + + IN L GIIRES++ A P++ V KK+G+ RM VDY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 353 VKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPDGHFEYLKM 532
+PLP I+ + K+ FT LD+ + +H + ++ K AF P G FEYL M
Sbjct: 476 KPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVR-KGDEHKLAFRCPRGVFEYLVM 534
Query: 533 PYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNNLREVLQTLASAG 712
PYG++ AP +Q I+ L ++ V+ Y+DD+LI S + +E + ++++VLQ L +A
Sbjct: 535 PYGISTAPAHFQYFINTILGEAKES-HVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593
Query: 713 FSV 721
+
Sbjct: 594 LII 596
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 117 bits (281), Expect = 2e-27
Identities = 66/183 (36%), Positives = 104/183 (56%)
Frame = +2
Query: 173 RPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVDYRALNSIT 352
R Y L + + + IN L GIIRES++ A P++ V KK+G+ RM VDY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 353 VKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPDGHFEYLKM 532
+PLP I+ + K+ FT LD+ + +H + ++ K AF P G FEYL M
Sbjct: 476 KPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVR-KGDEHKLAFRCPRGVFEYLVM 534
Query: 533 PYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNNLREVLQTLASAG 712
PYG++ AP +Q I+ L ++ V+ Y+DD+LI S + +E + ++++VLQ L +A
Sbjct: 535 PYGISTAPAHFQYFINTILGEAKES-HVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593
Query: 713 FSV 721
+
Sbjct: 594 LII 596
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 117 bits (281), Expect = 2e-27
Identities = 66/183 (36%), Positives = 104/183 (56%)
Frame = +2
Query: 173 RPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVDYRALNSIT 352
R Y L + + + IN L GIIRES++ A P++ V KK+G+ RM VDY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 353 VKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPDGHFEYLKM 532
+PLP I+ + K+ FT LD+ + +H + ++ K AF P G FEYL M
Sbjct: 476 KPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVR-KGDEHKLAFRCPRGVFEYLVM 534
Query: 533 PYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNNLREVLQTLASAG 712
PYG++ AP +Q I+ L ++ V+ Y+DD+LI S + +E + ++++VLQ L +A
Sbjct: 535 PYGISTAPAHFQYFINTILGEAKES-HVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593
Query: 713 FSV 721
+
Sbjct: 594 LII 596
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 117 bits (281), Expect = 2e-27
Identities = 66/183 (36%), Positives = 104/183 (56%)
Frame = +2
Query: 173 RPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVDYRALNSIT 352
R Y L + + + IN L GIIRES++ A P++ V KK+G+ RM VDY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 353 VKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPDGHFEYLKM 532
+PLP I+ + K+ FT LD+ + +H + ++ K AF P G FEYL M
Sbjct: 476 KPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVR-KGDEHKLAFRCPRGVFEYLVM 534
Query: 533 PYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNNLREVLQTLASAG 712
PYG++ AP +Q I+ L ++ V+ Y+DD+LI S + +E + ++++VLQ L +A
Sbjct: 535 PYGISTAPAHFQYFINTILGEAKES-HVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593
Query: 713 FSV 721
+
Sbjct: 594 LII 596
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 117 bits (281), Expect = 2e-27
Identities = 66/183 (36%), Positives = 104/183 (56%)
Frame = +2
Query: 173 RPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVDYRALNSIT 352
R Y L + + + IN L GIIRES++ A P++ V KK+G+ RM VDY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 353 VKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPDGHFEYLKM 532
+PLP I+ + K+ FT LD+ + +H + ++ K AF P G FEYL M
Sbjct: 476 KPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVR-KGDEHKLAFRCPRGVFEYLVM 534
Query: 533 PYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNNLREVLQTLASAG 712
PYG++ AP +Q I+ L ++ V+ Y+DD+LI S + +E + ++++VLQ L +A
Sbjct: 535 PYGISTAPAHFQYFINTILGEAKES-HVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593
Query: 713 FSV 721
+
Sbjct: 594 LII 596
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 117 bits (281), Expect = 2e-27
Identities = 66/183 (36%), Positives = 104/183 (56%)
Frame = +2
Query: 173 RPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVDYRALNSIT 352
R Y L + + + IN L GIIRES++ A P++ V KK+G+ RM VDY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 353 VKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPDGHFEYLKM 532
+PLP I+ + K+ FT LD+ + +H + ++ K AF P G FEYL M
Sbjct: 476 KPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVR-KGDEHKLAFRCPRGVFEYLVM 534
Query: 533 PYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNNLREVLQTLASAG 712
PYG++ AP +Q I+ L ++ V+ Y+DD+LI S + +E + ++++VLQ L +A
Sbjct: 535 PYGISTAPAHFQYFINTILGEAKES-HVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593
Query: 713 FSV 721
+
Sbjct: 594 LII 596
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 117 bits (281), Expect = 2e-27
Identities = 66/183 (36%), Positives = 104/183 (56%)
Frame = +2
Query: 173 RPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVDYRALNSIT 352
R Y L + + + IN L GIIRES++ A P++ V KK+G+ RM VDY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 353 VKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPDGHFEYLKM 532
+PLP I+ + K+ FT LD+ + +H + ++ K AF P G FEYL M
Sbjct: 476 KPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVR-KGDEHKLAFRCPRGVFEYLVM 534
Query: 533 PYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNNLREVLQTLASAG 712
PYG++ AP +Q I+ L ++ V+ Y+DD+LI S + +E + ++++VLQ L +A
Sbjct: 535 PYGISTAPAHFQYFINTILGEAKES-HVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593
Query: 713 FSV 721
+
Sbjct: 594 LII 596
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 117 bits (281), Expect = 2e-27
Identities = 66/183 (36%), Positives = 104/183 (56%)
Frame = +2
Query: 173 RPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVDYRALNSIT 352
R Y L + + + IN L GIIRES++ A P++ V KK+G+ RM VDY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 353 VKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPDGHFEYLKM 532
+PLP I+ + K+ FT LD+ + +H + ++ K AF P G FEYL M
Sbjct: 476 KPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVR-KGDEHKLAFRCPRGVFEYLVM 534
Query: 533 PYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNNLREVLQTLASAG 712
PYG++ AP +Q I+ L ++ V+ Y+DD+LI S + +E + ++++VLQ L +A
Sbjct: 535 PYGISTAPAHFQYFINTILGEAKES-HVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593
Query: 713 FSV 721
+
Sbjct: 594 LII 596
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 115 bits (276), Expect = 8e-27
Identities = 65/183 (35%), Positives = 104/183 (56%)
Frame = +2
Query: 173 RPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVDYRALNSIT 352
R Y L + + + IN L GIIRES++ A P++ V KK+G+ RM VDY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 353 VKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPDGHFEYLKM 532
+PLP I+ + K+ FT LD+ + +H + ++ K AF P G FEYL M
Sbjct: 476 KPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVR-KGDEHKLAFRCPRGVFEYLVM 534
Query: 533 PYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNNLREVLQTLASAG 712
PYG++ AP +Q I+ T+ + V+ Y+D++LI S + +E + ++++VLQ L +A
Sbjct: 535 PYGISIAPAHFQYFIN-TILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNAN 593
Query: 713 FSV 721
+
Sbjct: 594 LII 596
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 115 bits (276), Expect = 8e-27
Identities = 65/183 (35%), Positives = 104/183 (56%)
Frame = +2
Query: 173 RPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVDYRALNSIT 352
R Y L + + + IN L GIIRES++ A P++ V KK+G+ RM VDY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 353 VKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPDGHFEYLKM 532
+PLP I+ + K+ FT LD+ + +H + ++ K AF P G FEYL M
Sbjct: 476 KPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVR-KGDEHKLAFRCPRGVFEYLVM 534
Query: 533 PYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNNLREVLQTLASAG 712
PYG++ AP +Q I+ T+ + V+ Y+D++LI S + +E + ++++VLQ L +A
Sbjct: 535 PYGISIAPAHFQYFIN-TILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNAN 593
Query: 713 FSV 721
+
Sbjct: 594 LII 596
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 115 bits (276), Expect = 8e-27
Identities = 65/183 (35%), Positives = 104/183 (56%)
Frame = +2
Query: 173 RPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVDYRALNSIT 352
R Y L + + + IN L GIIRES++ A P++ V KK+G+ RM VDY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 353 VKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPDGHFEYLKM 532
+PLP I+ + K+ FT LD+ + +H + ++ K AF P G FEYL M
Sbjct: 476 KPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVR-KGDEHKLAFRCPRGVFEYLVM 534
Query: 533 PYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNNLREVLQTLASAG 712
PYG++ AP +Q I+ T+ + V+ Y+D++LI S + +E + ++++VLQ L +A
Sbjct: 535 PYGISIAPAHFQYFIN-TILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNAN 593
Query: 713 FSV 721
+
Sbjct: 594 LII 596
>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 28.7 bits (61), Expect = 0.88
Identities = 26/92 (28%), Positives = 43/92 (46%)
Frame = +2
Query: 434 MATGFHQLPLKDDASISKTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK 613
MA+ F L K A S T D +++P+GL +PV +LK ++ +
Sbjct: 1 MASSFPALQFKVVARCSTTRARVTD-----IQLPHGLVESPVFMPVGTQASLKGVLP--E 53
Query: 614 VITYVDDVLILSNTVTEGLNNLREVLQTLASA 709
+ + ++L+NT GL +EVL T+ A
Sbjct: 54 QLDALGCKIMLNNTYHLGLKPGQEVLDTVGGA 85
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 368 PLPRIDDHIDKLGKYIFFTSL--DMATGFHQLPLKD 469
PLP +DD ++K+ + F DM GF +L KD
Sbjct: 198 PLPHVDDLVNKVNRTRDFYQFLKDMRKGFRELHRKD 233
>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 316
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 168 INDRIGFP*TKKIGFVILLMICLQRASYVSPNRNML 275
++DR P + + F+ LLM ++++V RN L
Sbjct: 37 VSDRYSIPFSLAVNFIFLLMRIYIKSTHVPVQRNQL 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,987
Number of Sequences: 5004
Number of extensions: 60993
Number of successful extensions: 175
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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