Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13b01
(721 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein pro... 68 4e-11
DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase p... 66 9e-11
AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein. 66 9e-11
AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein. 65 2e-10
AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein. 65 2e-10
AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein. 65 3e-10
AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein... 65 3e-10
AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein. 65 3e-10
AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein. 64 5e-10
AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein pro... 62 3e-09
AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein. 62 3e-09
AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein. 62 3e-09
AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein pro... 61 4e-09
AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein. 61 4e-09
AF480924-3|AAM81188.1| 863|Homo sapiens pol protein protein. 57 6e-08
AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein pro... 56 2e-07
U87589-1|AAB63112.1| 197|Homo sapiens polymerase protein. 51 4e-06
U87595-1|AAB63117.1| 197|Homo sapiens polymerase protein. 48 3e-05
U87593-1|AAB63116.1| 201|Homo sapiens polymerase protein. 48 3e-05
U87590-1|AAB63113.1| 198|Homo sapiens polymerase protein. 47 6e-05
U87591-1|AAB63114.1| 198|Homo sapiens polymerase protein. 47 8e-05
U87592-1|AAB63115.1| 201|Homo sapiens polymerase protein. 46 1e-04
M14123-4|AAA88033.1| 1361|Homo sapiens protein ( Human endogenou... 38 0.036
AY186778-1|AAO27434.1| 727|Homo sapiens polymerase protein. 38 0.036
AF333072-2|AAL60056.1| 702|Homo sapiens pol protein protein. 38 0.036
L27841-1|AAA60120.1| 2024|Homo sapiens pericentriol material 1 p... 30 7.3
BC133052-1|AAI33053.1| 1859|Homo sapiens PCM1 protein protein. 30 7.3
>AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1177
Score = 67.7 bits (158), Expect = 4e-11
Identities = 51/201 (25%), Positives = 96/201 (47%), Gaps = 10/201 (4%)
Frame = +2
Query: 149 KSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVD 328
K++ PV ++L + + + N+ L KG I S S + SP+ +++KK G RM D
Sbjct: 952 KTEKPVWVNQWQLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTD 1011
Query: 329 YRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPD 508
RA+N++ ++ PL + K +D+ F +PL + K AF P
Sbjct: 1012 LRAVNAV-IQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQ-DCEKFAFTIPA 1069
Query: 509 -------GHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---VITYVDDVLILSNTV 658
F++ +P G+ N+P + Q + + L+P+ + +I Y+DD+L + T
Sbjct: 1070 INNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETK 1129
Query: 659 TEGLNNLREVLQTLASAGFSV 721
+ ++ + +ASAG ++
Sbjct: 1130 DKLIDCYTFLQAEVASAGLAI 1150
>DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase
protein.
Length = 573
Score = 66.5 bits (155), Expect = 9e-11
Identities = 50/201 (24%), Positives = 96/201 (47%), Gaps = 10/201 (4%)
Frame = +2
Query: 149 KSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVD 328
K++ PV ++L + + + N+ L KG I S S + SP+ +++KK G RM D
Sbjct: 29 KTEKPVWVNQWQLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTD 88
Query: 329 YRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPD 508
RA+N++ ++ PL + K +D+ F +PL + K AF P
Sbjct: 89 LRAVNAV-IQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQ-DCEKFAFTIPA 146
Query: 509 -------GHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---VITYVDDVLILSNTV 658
F++ +P G+ N+P + Q + + L+P+ + +I Y+DD+L + T
Sbjct: 147 INNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETK 206
Query: 659 TEGLNNLREVLQTLASAGFSV 721
+ ++ + +A+AG ++
Sbjct: 207 DKLIDCYTFLQAEVANAGLAI 227
>AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 66.5 bits (155), Expect = 9e-11
Identities = 50/201 (24%), Positives = 96/201 (47%), Gaps = 10/201 (4%)
Frame = +2
Query: 149 KSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVD 328
K++ PV + L + + + N+ L KG I S S + SP+ +++KK G RM D
Sbjct: 12 KTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTD 71
Query: 329 YRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVT-- 502
RA+N++ ++ PL + K ++D+ F +PL + K AF
Sbjct: 72 LRAVNAV-IQPMGPLQPGLPSPAMIPKDWPLITIDLKDCFFTIPLAEQ-DCEKFAFTISA 129
Query: 503 -----PDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---VITYVDDVLILSNTV 658
P F++ +P G+ N+P + Q + + L+P+ + +I Y+DD+L + T
Sbjct: 130 INNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETK 189
Query: 659 TEGLNNLREVLQTLASAGFSV 721
+ ++ + +A+AG ++
Sbjct: 190 DKLIDCYTFLQAEVANAGLAI 210
>AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 65.3 bits (152), Expect = 2e-10
Identities = 50/201 (24%), Positives = 95/201 (47%), Gaps = 10/201 (4%)
Frame = +2
Query: 149 KSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVD 328
K++ PV + L + + + N+ L KG I S S + SP+ +++KK G RM D
Sbjct: 29 KTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTD 88
Query: 329 YRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPD 508
RA+N++ ++ PL + K +D+ F +PL + K AF P
Sbjct: 89 LRAVNAV-IQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQ-DCEKFAFTIPA 146
Query: 509 -------GHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---VITYVDDVLILSNTV 658
F++ +P G+ N+P + Q + + L+P+ + +I Y+DD+L + T
Sbjct: 147 INNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETK 206
Query: 659 TEGLNNLREVLQTLASAGFSV 721
+ ++ + +A+AG ++
Sbjct: 207 DKLIDCYTFLQAEVANAGLAI 227
>AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 65.3 bits (152), Expect = 2e-10
Identities = 48/200 (24%), Positives = 95/200 (47%), Gaps = 9/200 (4%)
Frame = +2
Query: 149 KSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVD 328
K++ PV + L + + + N+ L KG I S S + SP+ +++KK G RM D
Sbjct: 12 KTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTD 71
Query: 329 YRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDA------SISKT 490
RA+N++ ++ PL + K +D+ F +PL + +I
Sbjct: 72 LRAVNAV-IQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIPAI 130
Query: 491 AFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---VITYVDDVLILSNTVT 661
+ P F++ +P G+ N+P + Q + + L+P+ + +I Y+DD+L + T
Sbjct: 131 NYKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETKD 190
Query: 662 EGLNNLREVLQTLASAGFSV 721
+ ++ + +A+AG ++
Sbjct: 191 KLIDCYTFLQAEVANAGLAI 210
>AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 64.9 bits (151), Expect = 3e-10
Identities = 50/201 (24%), Positives = 95/201 (47%), Gaps = 10/201 (4%)
Frame = +2
Query: 149 KSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVD 328
K++ PV + L + + + N+ L KG I S S + SP+ +++KK G RM D
Sbjct: 29 KTERPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTD 88
Query: 329 YRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPD 508
RA+N++ ++ PL + K +D+ F +PL + K AF P
Sbjct: 89 LRAVNAV-IQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQ-DCEKFAFTIPA 146
Query: 509 -------GHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---VITYVDDVLILSNTV 658
F++ +P G+ N+P + Q + + L+P+ + +I Y+DD+L + T
Sbjct: 147 INNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETK 206
Query: 659 TEGLNNLREVLQTLASAGFSV 721
+ ++ + +A+AG ++
Sbjct: 207 DKLIDCYTFLQAEVANAGLAI 227
>AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein
protein.
Length = 2294
Score = 64.9 bits (151), Expect = 3e-10
Identities = 50/201 (24%), Positives = 95/201 (47%), Gaps = 10/201 (4%)
Frame = +2
Query: 149 KSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVD 328
K++ PV + L + + + N+ L KG I S S + SP+ +++KK G RM D
Sbjct: 952 KTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTD 1011
Query: 329 YRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPD 508
RA+N++ ++ PL + K +D+ F +PL + K AF P
Sbjct: 1012 LRAVNAL-IQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQ-DCEKFAFTIPA 1069
Query: 509 -------GHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---VITYVDDVLILSNTV 658
F++ +P G+ N+P + Q + + L+P+ + +I Y+DD+L + T
Sbjct: 1070 INNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETK 1129
Query: 659 TEGLNNLREVLQTLASAGFSV 721
+ ++ + +A+AG ++
Sbjct: 1130 DKLIDCYTFLQAEVANAGLAI 1150
>AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein.
Length = 596
Score = 64.9 bits (151), Expect = 3e-10
Identities = 50/201 (24%), Positives = 95/201 (47%), Gaps = 10/201 (4%)
Frame = +2
Query: 149 KSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVD 328
K++ PV + L + + + N+ L KG I S S + SP+ +++KK G RM D
Sbjct: 28 KTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTD 87
Query: 329 YRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPD 508
RA+N++ ++ PL + K +D+ F +PL + K AF P
Sbjct: 88 LRAVNAL-IQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQ-DCEKFAFTIPA 145
Query: 509 -------GHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---VITYVDDVLILSNTV 658
F++ +P G+ N+P + Q + + L+P+ + +I Y+DD+L + T
Sbjct: 146 INNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETK 205
Query: 659 TEGLNNLREVLQTLASAGFSV 721
+ ++ + +A+AG ++
Sbjct: 206 DKLIDCYTFLQAEVANAGLAI 226
>AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein.
Length = 597
Score = 64.1 bits (149), Expect = 5e-10
Identities = 50/201 (24%), Positives = 94/201 (46%), Gaps = 10/201 (4%)
Frame = +2
Query: 149 KSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVD 328
K++ PV + L + + + N+ L KG I S S + SP+ +++KK G RM D
Sbjct: 28 KTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTD 87
Query: 329 YRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPD 508
RA+N++ ++ PL + K +D+ F +PL + K AF P
Sbjct: 88 LRAVNAV-IQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQ-DCEKFAFTIPA 145
Query: 509 -------GHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---VITYVDDVLILSNTV 658
F++ +P G+ N P + Q + + L+P+ + +I Y+DD+L + T
Sbjct: 146 INNKEPATRFQWKVLPQGMLNNPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETK 205
Query: 659 TEGLNNLREVLQTLASAGFSV 721
+ ++ + +A+AG ++
Sbjct: 206 DKLIDCYTFLQAEVANAGLAI 226
>AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1879
Score = 61.7 bits (143), Expect = 3e-09
Identities = 49/201 (24%), Positives = 94/201 (46%), Gaps = 10/201 (4%)
Frame = +2
Query: 149 KSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVD 328
K++ PV + L + + + N+ L KG I S S + SP+ +++KK G RM D
Sbjct: 952 KTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTD 1011
Query: 329 YRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPD 508
RA+N++ ++ PL + K +D+ F +PL + K AF P
Sbjct: 1012 LRAVNAV-IQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQ-DCEKFAFTIPA 1069
Query: 509 -------GHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---VITYVDDVLILSNTV 658
F++ +P G+ N+P + Q + + L+P+ + +I +DD+L + T
Sbjct: 1070 INNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHCIDDILCAAETK 1129
Query: 659 TEGLNNLREVLQTLASAGFSV 721
+ ++ + +A+AG ++
Sbjct: 1130 DKLIDCYTFLQAEVANAGLAI 1150
>AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 61.7 bits (143), Expect = 3e-09
Identities = 49/201 (24%), Positives = 94/201 (46%), Gaps = 10/201 (4%)
Frame = +2
Query: 149 KSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVD 328
K++ PV + L + + + N+ L KG I S S + SP+ +++KK G RM D
Sbjct: 29 KTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTD 88
Query: 329 YRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPD 508
RA+N++ ++ PL + K +D+ F +PL + K AF P
Sbjct: 89 LRAVNAV-IQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQ-DCEKFAFTIPA 146
Query: 509 -------GHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---VITYVDDVLILSNTV 658
F++ +P G+ N+P + Q + + L+P+ + +I +DD+L + T
Sbjct: 147 INNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHCIDDILCAAETK 206
Query: 659 TEGLNNLREVLQTLASAGFSV 721
+ ++ + +A+AG ++
Sbjct: 207 DKLIDCYTFLQAEVANAGLAI 227
>AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 61.7 bits (143), Expect = 3e-09
Identities = 49/201 (24%), Positives = 94/201 (46%), Gaps = 10/201 (4%)
Frame = +2
Query: 149 KSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVD 328
K++ PV + L + + + N+ L KG I S S + SP+ +++KK G RM D
Sbjct: 29 KTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTD 88
Query: 329 YRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPD 508
RA+N++ ++ PL + K +D+ F +PL + K AF P
Sbjct: 89 LRAVNAV-IQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQ-DCEKFAFTIPA 146
Query: 509 -------GHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---VITYVDDVLILSNTV 658
F++ +P G+ N+P + Q + + L+P+ + +I +DD+L + T
Sbjct: 147 INNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHCIDDILCAAETK 206
Query: 659 TEGLNNLREVLQTLASAGFSV 721
+ ++ + +A+AG ++
Sbjct: 207 DKLIDCYTFLQAEVANAGLAI 227
>AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1755
Score = 60.9 bits (141), Expect = 4e-09
Identities = 48/201 (23%), Positives = 93/201 (46%), Gaps = 10/201 (4%)
Frame = +2
Query: 149 KSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVD 328
K++ PV + L + + + N+ L KG I S S + SP+ +++KK G D
Sbjct: 952 KTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWHTLTD 1011
Query: 329 YRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPD 508
RA+N++ ++ PL + K +D+ F +PL + K AF P
Sbjct: 1012 LRAVNAV-IQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQ-DCEKFAFTIPA 1069
Query: 509 -------GHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---VITYVDDVLILSNTV 658
F++ +P G+ N+P + Q + + L+P+ + +I Y+DD+L + T
Sbjct: 1070 INNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETK 1129
Query: 659 TEGLNNLREVLQTLASAGFSV 721
+ ++ + +A+AG ++
Sbjct: 1130 DKLIDCYTFLQAEVANAGLAI 1150
>AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 60.9 bits (141), Expect = 4e-09
Identities = 49/201 (24%), Positives = 93/201 (46%), Gaps = 10/201 (4%)
Frame = +2
Query: 149 KSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVD 328
K++ PV + L + + + N+ L KG I S S + SP+ +++KK G RM D
Sbjct: 12 KTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTD 71
Query: 329 YRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTP- 505
RA+N++ ++ PL + K +D+ F +PL + K AF P
Sbjct: 72 LRAVNAV-IQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQ-DCEKFAFTIPA 129
Query: 506 ------DGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---VITYVDDVLILSNTV 658
F++ +P G+ N P + Q + + L+P+ + +I +DD+L + T
Sbjct: 130 INNKEPPTRFQWKVLPQGMLNNPTICQTFVGRALQPVREKFSDCYIIHCIDDILCAAETK 189
Query: 659 TEGLNNLREVLQTLASAGFSV 721
+ ++ + +A+AG ++
Sbjct: 190 DKLIDCYTFLQAEVANAGLAI 210
>AF480924-3|AAM81188.1| 863|Homo sapiens pol protein protein.
Length = 863
Score = 57.2 bits (132), Expect = 6e-08
Identities = 43/184 (23%), Positives = 88/184 (47%), Gaps = 13/184 (7%)
Frame = +2
Query: 209 VRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVDYRALNSITVKERFPLPRIDD 388
V +I+ L G ++ S S + +P+ ++KKK G ++ D RA+N ++ P+ +
Sbjct: 41 VNDIVLQQLEAGHLQPSTSPWNTPVFVIKKKSGKYQLLHDLRAVN----QQMQPMGALQP 96
Query: 389 HID---KLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTP-------DGHFEYLKMPY 538
+ + K+ LD+ F +PL + I + AF P D +E+ +P
Sbjct: 97 GLPVPTMIPKHWPLIVLDLKDCFFSIPLHEQ-DIQRFAFTVPSINHQGPDKRYEWKVLPQ 155
Query: 539 GLANAPVVYQRVISKTLKPL---IDAGKVITYVDDVLILSNTVTEGLNNLREVLQTLASA 709
G+ N+P + Q + + ++P+ +++ Y+DD+LI + + + + + +L L
Sbjct: 156 GMTNSPAICQLYVDQAVEPVRQQCPKVQILHYMDDLLITAESESHLMEAYKLLLLYLEKV 215
Query: 710 GFSV 721
G V
Sbjct: 216 GLQV 219
>AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1117
Score = 55.6 bits (128), Expect = 2e-07
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 7/157 (4%)
Frame = +2
Query: 149 KSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVD 328
K++ PV + L + + + N+ L KG I S S + SP+ +++KK G RM D
Sbjct: 952 KTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTD 1011
Query: 329 YRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPD 508
RA+N++ ++ PL + K +D+ F +PL + K AF P
Sbjct: 1012 LRAVNAV-IQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQ-DCEKFAFTIPA 1069
Query: 509 -------GHFEYLKMPYGLANAPVVYQRVISKTLKPL 598
F++ +P G+ N+P + Q + + L+P+
Sbjct: 1070 INNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPV 1106
>U87589-1|AAB63112.1| 197|Homo sapiens polymerase protein.
Length = 197
Score = 51.2 bits (117), Expect = 4e-06
Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 11/156 (7%)
Frame = +2
Query: 287 LVKKKDGSDRMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLK 466
+++KK G RM D RA+N++ ++ PL + +Y +D+ F +PL
Sbjct: 1 VIQKKSGRWRMLTDLRAVNAV-IQPMGPLQPGLPSPAMIPEYWPLIIIDLKYCFFTIPLA 59
Query: 467 DDASISKTAFVTPD-------GHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---V 616
K AF P F++ +P G+ N+P + Q +++ L+P+ D +
Sbjct: 60 KQ-DFEKLAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVAQVLQPVRDKFSDCYI 118
Query: 617 ITYVDDVLILSNTVTEGLNNLREVLQT-LASAGFSV 721
I YVDD+L + T + L + LQT +A+AG ++
Sbjct: 119 IHYVDDILCAAET-RDKLIDCYTFLQTEVANAGLTI 153
>U87595-1|AAB63117.1| 197|Homo sapiens polymerase protein.
Length = 197
Score = 48.4 bits (110), Expect = 3e-05
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Frame = +2
Query: 287 LVKKKDGSDRMCVDYRALNSIT-----VKERFPLPRIDDHIDKLG----KYIFFTSLDMA 439
+++KK G RM D RA+N++ ++ P P + L KY FFT
Sbjct: 1 VIQKKSGRWRMLTDLRAVNAVIQPMGPLQPGLPSPAMIPEDWPLIIIDLKYCFFTIPLAK 60
Query: 440 TGFHQLPLKDDASISKTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK-- 613
F +L A +K P F++ +P G+ N+P + Q +++ L+P+ D
Sbjct: 61 QDFEKLAFTIPAINNKE----PATRFQWKVLPQGMLNSPTICQTFVAQVLQPVRDKFSDC 116
Query: 614 -VITYVDDVLILSNTVTEGLNNLREVLQT-LASAGFSV 721
+I YVDD+L + T + L + LQT +A+AG ++
Sbjct: 117 YIIHYVDDILCAAET-RDKLIDCYTFLQTEVANAGLTI 153
>U87593-1|AAB63116.1| 201|Homo sapiens polymerase protein.
Length = 201
Score = 48.4 bits (110), Expect = 3e-05
Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Frame = +2
Query: 287 LVKKKDGSDRMCVDYRALNSIT--VKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLP 460
+++KK G RM D RA+N++ ++ PL + + K +D+ F +P
Sbjct: 1 VIQKKSGKWRMLTDLRAVNAVNAVIQPMGPLQPGLPSLAMIPKDWPLIIIDLKDCFFTIP 60
Query: 461 LKDDASISKTAFVTPD-------GHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK-- 613
L + K AF P F++ +P G+ N+P + Q + + L+P+ +
Sbjct: 61 LAEQ-DCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDC 119
Query: 614 -VITYVDDVLILSNTVTEGLNNLREVLQTLASAGFSV 721
+I Y+DD+L + T + ++ + +A+AG ++
Sbjct: 120 YIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAI 156
>U87590-1|AAB63113.1| 198|Homo sapiens polymerase protein.
Length = 198
Score = 47.2 bits (107), Expect = 6e-05
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 10/155 (6%)
Frame = +2
Query: 287 LVKKKDGSDRMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLK 466
+++KK G RM D RA+N++ ++ PL + K +D+ F +PL
Sbjct: 1 VIQKKSGKWRMLTDLRAVNAV-IQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLA 59
Query: 467 DDASISKTAFVTPD-------GHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---V 616
+ K AF P F++ +P G+ N+P + Q + + L+P+ + +
Sbjct: 60 EQ-DCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYI 118
Query: 617 ITYVDDVLILSNTVTEGLNNLREVLQTLASAGFSV 721
I Y+DD+L + T + ++ + +A+AG ++
Sbjct: 119 IHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAI 153
>U87591-1|AAB63114.1| 198|Homo sapiens polymerase protein.
Length = 198
Score = 46.8 bits (106), Expect = 8e-05
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 10/155 (6%)
Frame = +2
Query: 287 LVKKKDGSDRMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLK 466
+++KK G RM D RA+N++ ++ PL + K +D+ F +PL
Sbjct: 1 VIQKKSGKWRMLTDLRAVNAL-IQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLA 59
Query: 467 DDASISKTAFVTPD-------GHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---V 616
+ K AF P F++ +P G+ N+P + Q + + L+P+ + +
Sbjct: 60 EQ-DCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYI 118
Query: 617 ITYVDDVLILSNTVTEGLNNLREVLQTLASAGFSV 721
I Y+DD+L + T + ++ + +A+AG ++
Sbjct: 119 IHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAI 153
>U87592-1|AAB63115.1| 201|Homo sapiens polymerase protein.
Length = 201
Score = 46.0 bits (104), Expect = 1e-04
Identities = 36/157 (22%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Frame = +2
Query: 287 LVKKKDGSDRMCVDYRALNSIT--VKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLP 460
+++KK G RM D RA+N++ ++ PL + + K +D+ F +P
Sbjct: 1 VIQKKSGKWRMLTDLRAVNAVNAVIQPMGPLQPGLPSLAMIPKDWPLIIIDLKDCFFTIP 60
Query: 461 LKDDASISKTAFVTPD-------GHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK-- 613
L + K AF P F++ +P G+ N+P + Q + + L+P+ +
Sbjct: 61 LAEQ-DCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDC 119
Query: 614 -VITYVDDVLILSNTVTEGLNNLREVLQTLASAGFSV 721
+I Y+DD+L + + ++ + +A+AG ++
Sbjct: 120 YIIHYIDDILCAAEMKDKLIDCYTFLQAEVANAGLAI 156
>M14123-4|AAA88033.1| 1361|Homo sapiens protein ( Human endogenous
retrovirus HERV-K10. ).
Length = 1361
Score = 37.9 bits (84), Expect = 0.036
Identities = 18/76 (23%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = +2
Query: 503 PDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---VITYVDDVLILSNTVTEGLN 673
P F++ +P G+ N+P + Q + + L+P+ + +I Y+DD+L + T + ++
Sbjct: 54 PATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLID 113
Query: 674 NLREVLQTLASAGFSV 721
+ +A+AG ++
Sbjct: 114 CYTFLQAEVANAGLAI 129
>AY186778-1|AAO27434.1| 727|Homo sapiens polymerase protein.
Length = 727
Score = 37.9 bits (84), Expect = 0.036
Identities = 18/76 (23%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = +2
Query: 503 PDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---VITYVDDVLILSNTVTEGLN 673
P F++ +P G+ N+P + Q + + L+P+ + +I Y+DD+L + T + ++
Sbjct: 15 PATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLID 74
Query: 674 NLREVLQTLASAGFSV 721
+ +A+AG ++
Sbjct: 75 CYTFLQAEVANAGLAI 90
>AF333072-2|AAL60056.1| 702|Homo sapiens pol protein protein.
Length = 702
Score = 37.9 bits (84), Expect = 0.036
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +2
Query: 503 PDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK---VITYVDDVLILSNTVTEGLN 673
P F++ +P G+ N+P + Q + + L+P+ D +I Y DD+L + T + ++
Sbjct: 42 PATRFQWKVLPQGMLNSPTICQTFVGRALQPVRDKFSDCYIIHYFDDILCAAETKDKLID 101
Query: 674 NLREVLQTLASAGFSV 721
+ +A+AG ++
Sbjct: 102 CYTFLQAEVANAGLAI 117
>L27841-1|AAA60120.1| 2024|Homo sapiens pericentriol material 1
protein.
Length = 2024
Score = 30.3 bits (65), Expect = 7.3
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +2
Query: 173 RPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVDYRALNSIT 352
R + + +E + R + L+A+ R+ +E ASP+ + + DGS+ +C ++ T
Sbjct: 828 RRHEMLREELRQRRKQLEALMAEHQRRQGLAETASPVAVSLRSDGSENLCTPQQSRTEKT 887
Query: 353 V 355
+
Sbjct: 888 M 888
>BC133052-1|AAI33053.1| 1859|Homo sapiens PCM1 protein protein.
Length = 1859
Score = 30.3 bits (65), Expect = 7.3
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +2
Query: 173 RPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVDYRALNSIT 352
R + + +E + R + L+A+ R+ +E ASP+ + + DGS+ +C ++ T
Sbjct: 827 RRHEMLREELRQRRKQLEALMAEHQRRQGLAETASPVAVSLRSDGSENLCTPQQSRTEKT 886
Query: 353 V 355
+
Sbjct: 887 M 887
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,645,268
Number of Sequences: 237096
Number of extensions: 1977737
Number of successful extensions: 2491
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2474
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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