Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13b01
(721 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein. 184 8e-47
X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein ( Dros... 169 2e-42
AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein ... 164 9e-41
AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein ... 164 1e-40
AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein ... 163 2e-40
AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed... 163 3e-40
X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein ( Dros... 157 1e-38
AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein ... 155 4e-38
X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein pr... 154 1e-37
AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran... 148 7e-36
AF541947-2|AAN34648.1| 407|Drosophila melanogaster truncated po... 145 5e-35
AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein. 144 8e-35
AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse tran... 143 2e-34
AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran... 136 3e-32
AY050234-1|AAK84933.1| 1026|Drosophila melanogaster SD02026p pro... 127 1e-29
Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia poly... 126 3e-29
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros... 126 4e-29
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen... 126 4e-29
U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse transc... 124 1e-28
X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D. m... 122 5e-28
M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protei... 122 5e-28
EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein ... 122 5e-28
EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein ... 122 5e-28
AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol pr... 122 5e-28
AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p pro... 122 7e-28
DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein ... 121 9e-28
DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein ... 121 9e-28
AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprot... 120 2e-27
AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein. 119 3e-27
AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed... 119 3e-27
AF541949-2|AAN34652.1| 826|Drosophila melanogaster pol protein ... 51 1e-06
AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed... 51 1e-06
AJ487856-1|CAD32253.1| 1830|Drosophila melanogaster hypothetical... 39 0.008
>X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein.
Length = 1494
Score = 184 bits (449), Expect = 8e-47
Identities = 85/189 (44%), Positives = 129/189 (68%)
Frame = +2
Query: 134 MEIKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSD 313
+++ LK+ P + P RLS EK+R++ ++++ L G IR S SEYASPI+LVKKK G
Sbjct: 707 IQLCLKNPKPFSCSPRRLSYTEKDRLQKLLDEYLENGFIRPSDSEYASPIVLVKKKTGDL 766
Query: 314 RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTA 493
RMCVD+R LN +T+K+ +PLP IDD +D++ + FT LD+ GF + +K + SI T+
Sbjct: 767 RMCVDFRKLNKMTMKDNYPLPLIDDLLDRMNEKTVFTKLDLKNGFFHVHVKKE-SIKYTS 825
Query: 494 FVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLN 673
FVTP G +E+L+MP+GL NAP V+QR ++K +I KV+ Y+DD+L+ + + E L
Sbjct: 826 FVTPLGQYEWLRMPFGLKNAPSVFQRFVNKIFADMIRENKVVVYMDDILLATENINEHLE 885
Query: 674 NLREVLQTL 700
L+E+ + L
Sbjct: 886 TLKEIFKRL 894
>X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein (
Drosophila melanogastertransposable element 297. ).
Length = 1059
Score = 169 bits (412), Expect = 2e-42
Identities = 83/192 (43%), Positives = 128/192 (66%), Gaps = 5/192 (2%)
Frame = +2
Query: 161 PVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKK-DGSD----RMCV 325
P+ + Y L+ + V N + ++L +G+IRES S Y SP +V KK D S R+ +
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265
Query: 326 DYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTP 505
DYR LN IT+ +R+P+P +D+ + KLGK +FT++D+A GFHQ+ + D+ SISKTAF T
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEM-DEESISKTAFSTK 324
Query: 506 DGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNNLRE 685
GH+EYL+MP+GL NAP +QR ++ L+PL++ + Y+DD++I S ++TE LN+++
Sbjct: 325 SGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNK-HCLVYLDDIIIFSTSLTEHLNSIQL 383
Query: 686 VLQTLASAGFSV 721
V LA A +
Sbjct: 384 VFTKLADANLKL 395
>AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein
protein.
Length = 849
Score = 164 bits (399), Expect = 9e-41
Identities = 81/199 (40%), Positives = 125/199 (62%), Gaps = 5/199 (2%)
Frame = +2
Query: 140 IKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKK-DGSD- 313
I ++PV + Y + V I ++L +GIIRES S Y SPI +V KK D S
Sbjct: 162 INTTHNIPVYSKMYSFQQSYEQEVERQIQEMLEQGIIRESSSPYCSPIWVVPKKLDASGQ 221
Query: 314 ---RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASIS 484
R+ +DYR LN IT+ +R+P+P ID+ + KLG+ +FT++D+A GFHQ+ + D SI+
Sbjct: 222 QKLRIVIDYRKLNEITINDRYPMPNIDEILGKLGRSNYFTTIDLAKGFHQIEM-DSESIA 280
Query: 485 KTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTE 664
KTAF T GH+EY +MP+GL NAP +QR ++ L+PL++ + Y+DD+++ S ++ E
Sbjct: 281 KTAFSTKYGHYEYTRMPFGLKNAPATFQRCMNNLLRPLLNK-NCLVYLDDIIVFSTSLEE 339
Query: 665 GLNNLREVLQTLASAGFSV 721
L +L V + L+ A +
Sbjct: 340 HLQSLEAVFEKLSQANLKL 358
>AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein
protein.
Length = 1006
Score = 164 bits (398), Expect = 1e-40
Identities = 80/199 (40%), Positives = 126/199 (63%), Gaps = 5/199 (2%)
Frame = +2
Query: 140 IKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSD-- 313
I+ + PV ++PY + V N I ++L +GIIRES S Y SPI++V KK
Sbjct: 147 IRTSHNDPVYRKPYGYAPGLDTEVENQIKEMLDQGIIRESNSPYCSPIVVVPKKPDISGQ 206
Query: 314 ---RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASIS 484
R+ +DYR LN IT+ +++P+P +D+ + KLG +FT++D+ GFHQ+ + D SI
Sbjct: 207 KKYRIAIDYRYLNEITIADKYPIPNMDEILSKLGGCNYFTTIDLIKGFHQIEM-DPESIP 265
Query: 485 KTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTE 664
KTAF T GH+EY +MP+GL NAP +QR ++ L+PL++ + Y+DD+++ S ++ E
Sbjct: 266 KTAFTTKTGHYEYTRMPFGLKNAPATFQRCMNDVLRPLLNK-ICMVYLDDIIVFSASLEE 324
Query: 665 GLNNLREVLQTLASAGFSV 721
L +LR V Q L++A +
Sbjct: 325 HLQSLRAVFQALSNANLKL 343
>AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein
protein.
Length = 1150
Score = 163 bits (396), Expect = 2e-40
Identities = 81/199 (40%), Positives = 130/199 (65%), Gaps = 5/199 (2%)
Frame = +2
Query: 140 IKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKK-DGSD- 313
I+ + + PV ++PY+ V I +++ +GI+R+S+S Y SPI +V KK D S
Sbjct: 273 IQTQHEDPVYRKPYKYPQSVDQEVNKQIKEMIEQGIVRKSKSPYCSPIWVVPKKADASGK 332
Query: 314 ---RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASIS 484
R+ VDYR LN ITV ++FP+PR+D+ +DKLG+ +FT++D+A GFHQ+ + D+ SI+
Sbjct: 333 QKFRLVVDYRNLNEITVNDKFPIPRMDEILDKLGRCQYFTTIDLAKGFHQIQM-DENSIA 391
Query: 485 KTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTE 664
KTAF T GH+EY +MP+GL NAP +QR ++ L+ LI + Y+DD+++ S + E
Sbjct: 392 KTAFSTKHGHYEYTRMPFGLKNAPATFQRCMNNLLEDLI-YKDCLVYLDDIIVYSTPLEE 450
Query: 665 GLNNLREVLQTLASAGFSV 721
+ +L++V + L A +
Sbjct: 451 HILSLKKVFEKLRDANLKL 469
>AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 1065
Score = 163 bits (395), Expect = 3e-40
Identities = 82/199 (41%), Positives = 127/199 (63%), Gaps = 5/199 (2%)
Frame = +2
Query: 140 IKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKK-DGSD- 313
I K + P+ +RPY+ V N + D++ +GIIR+S S Y SP+ +V KK D S
Sbjct: 188 ITTKHEDPIYRRPYKYPQSFDEEVENQMKDMIRQGIIRKSNSPYCSPVWVVPKKPDASGK 247
Query: 314 ---RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASIS 484
R+ +DYR LN ITV +++P+P +D+ +DKLG +FT++D+A GFHQ+ + D+ SI+
Sbjct: 248 SKFRIVIDYRNLNEITVDDKYPIPVMDEILDKLGNCQYFTTIDLAKGFHQIQM-DENSIA 306
Query: 485 KTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTE 664
KTAF T +GHFEY +MP+GL NAP +QR ++ L LI + Y+DD+++ S ++ E
Sbjct: 307 KTAFSTKNGHFEYTRMPFGLKNAPATFQRCMNNLLADLI-YKNCLVYLDDIIVYSTSLEE 365
Query: 665 GLNNLREVLQTLASAGFSV 721
+ +LR+V L A +
Sbjct: 366 HIMSLRKVFLKLREANLKL 384
>X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein (
Drosophila melanogastercopia-like element 17.6. ).
Length = 1058
Score = 157 bits (382), Expect = 1e-38
Identities = 83/199 (41%), Positives = 127/199 (63%), Gaps = 5/199 (2%)
Frame = +2
Query: 140 IKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILV-KKKDGSD- 313
I K ++P+ + Y + V + I D+L +GIIR S S Y SPI +V KK+D S
Sbjct: 201 INTKHNLPLYSK-YSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGK 259
Query: 314 ---RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASIS 484
R+ +DYR LN ITV +R P+P +D+ + KLG+ +FT++D+A GFHQ+ + D S+S
Sbjct: 260 QKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEM-DPESVS 318
Query: 485 KTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTE 664
KTAF T GH+EYL+MP+GL NAP +QR ++ L+PL++ + Y+DD+++ S ++ E
Sbjct: 319 KTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNK-HCLVYLDDIIVFSTSLDE 377
Query: 665 GLNNLREVLQTLASAGFSV 721
L +L V + LA A +
Sbjct: 378 HLQSLGLVFEKLAKANLKL 396
>AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein
protein.
Length = 1037
Score = 155 bits (377), Expect = 4e-38
Identities = 80/196 (40%), Positives = 124/196 (63%), Gaps = 5/196 (2%)
Frame = +2
Query: 149 KSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKK-DGSD---- 313
K+D+P+ + Y+ K+ V I ++L +GIIR S+S Y SP+ +V+KK D S+
Sbjct: 128 KNDLPIYSKTYKYPEIHKDEVNRQIAEMLDQGIIRHSKSPYNSPLWVVQKKMDQSNKQKW 187
Query: 314 RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTA 493
R+ VDYR LN T+++RFP+P ID+ DKLG F++LD+A GF+Q+ + D+ + KTA
Sbjct: 188 RLVVDYRKLNKETIEDRFPIPNIDEIFDKLGDCKIFSTLDLAKGFYQIEM-DNKDVHKTA 246
Query: 494 FVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLN 673
F T GH+E+L+MP+GL NAP +QR+++ L P I Y+DD+LI S + E +N
Sbjct: 247 FSTTSGHYEFLRMPFGLRNAPSTFQRLMNNILSP-YTGQFCIVYMDDILIFSKNIGEHVN 305
Query: 674 NLREVLQTLASAGFSV 721
+L + L+ A +
Sbjct: 306 HLSCIFSCLSKANLKL 321
>X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein
protein.
Length = 1053
Score = 154 bits (374), Expect = 1e-37
Identities = 83/185 (44%), Positives = 120/185 (64%)
Frame = +2
Query: 164 VNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVDYRALN 343
V +RPYRLS +E+ VR +++L+ I+R S S +ASP++LVKKK+G+DR+CVD+R LN
Sbjct: 458 VQRRPYRLSPEEREVVRMQVSELIRCNIVRPSCSPFASPMLLVKKKNGTDRLCVDFRELN 517
Query: 344 SITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPDGHFEY 523
S T+ +++PLP I D I +L +FT LDMA+GFHQ+P+ + S+ TAFV
Sbjct: 518 SNTISDKYPLPLISDQIARLRGANYFTCLDMASGFHQIPIHPE-SVEYTAFV-------- 568
Query: 524 LKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNNLREVLQTLA 703
P GL NAP V+QR + L L ++ VI Y+DD++++S T L L+ VL L
Sbjct: 569 ---PDGLKNAPSVFQRTVINALGDLANS-FVIVYMDDIMVVSPTKELALERLKTVLNVLT 624
Query: 704 SAGFS 718
AGF+
Sbjct: 625 KAGFT 629
>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
transcriptase protein.
Length = 1088
Score = 148 bits (359), Expect = 7e-36
Identities = 74/199 (37%), Positives = 118/199 (59%), Gaps = 5/199 (2%)
Frame = +2
Query: 140 IKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKK-----D 304
IK D P++ + YR K V+ I +L + II+ S S +++P+ +V KK +
Sbjct: 195 IKTTDDTPIHTKSYRYPYIHKEEVKKQIEAMLNQDIIKSSYSPWSAPVWVVPKKITPTGE 254
Query: 305 GSDRMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASIS 484
R+ +DYR LN T+ +R+P+P I D +D+LGK +F++LD+A+GFHQ+ + D
Sbjct: 255 QKWRLVIDYRKLNEKTISDRYPIPNIADILDRLGKAKYFSTLDLASGFHQIEMNPD-DTP 313
Query: 485 KTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTE 664
KTAF GH+E+++MP+GL NAP +QRV+ LI + Y+DD++I S ++ E
Sbjct: 314 KTAFTVEGGHYEFIRMPFGLKNAPATFQRVMDNIFGDLIGT-ICLVYLDDIIIFSTSLQE 372
Query: 665 GLNNLREVLQTLASAGFSV 721
+L+ + L SA F V
Sbjct: 373 HFIHLKTIFGRLRSANFKV 391
>AF541947-2|AAN34648.1| 407|Drosophila melanogaster truncated pol
protein protein.
Length = 407
Score = 145 bits (352), Expect = 5e-35
Identities = 67/199 (33%), Positives = 122/199 (61%), Gaps = 5/199 (2%)
Frame = +2
Query: 140 IKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSD-- 313
I ++P++ + YR K+ VR I+ +L + II+ S S +++P+ +V KK +
Sbjct: 177 IPTTDNIPIHTKSYRYPFVHKDEVRKQISKMLEQNIIKNSHSPWSAPVWVVPKKSDNIGE 236
Query: 314 ---RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASIS 484
R+ +D+R LN TV +R+P+P I D +D +GK ++FT++D+A+GFHQ+ + + S
Sbjct: 237 KKWRLVIDFRKLNEKTVSDRYPIPNIADILDSIGKTMYFTTIDLASGFHQIQM-NPRDAS 295
Query: 485 KTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTE 664
KTAF +GH+E+ +MP+GL NAP +QRV+ L L+ + Y+DD+++ S ++ +
Sbjct: 296 KTAFTVENGHYEFTRMPFGLKNAPATFQRVMDNVLGDLV-GNVCLVYLDDIIVFSPSLQK 354
Query: 665 GLNNLREVLQTLASAGFSV 721
+ +++ V L +A +
Sbjct: 355 HIADIKSVFTKLQNANLKI 373
>AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein.
Length = 1003
Score = 144 bits (350), Expect = 8e-35
Identities = 77/201 (38%), Positives = 122/201 (60%), Gaps = 6/201 (2%)
Frame = +2
Query: 137 EIKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSD- 313
EI+ + P+ + Y ++ + V I++LL GIIR S S Y SPI +V KK +
Sbjct: 115 EIRTNTQDPIYAKSYPYPVNMRGEVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNG 174
Query: 314 ----RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASI 481
RM VD++ LN++T+ + +P+P I+ + LG +FT+LD+ +GFHQ+ +K ++ I
Sbjct: 175 EKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMK-ESDI 233
Query: 482 SKTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKV-ITYVDDVLILSNTV 658
KTAF T +G +E+L++P+GL NAP ++QR+I L+ I GKV Y+DD+++ S
Sbjct: 234 PKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHI--GKVCYVYIDDIIVFSEDY 291
Query: 659 TEGLNNLREVLQTLASAGFSV 721
NLR VL +L+ A V
Sbjct: 292 DTHWKNLRLVLASLSKANLQV 312
>AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse
transcriptase protein.
Length = 1217
Score = 143 bits (346), Expect = 2e-34
Identities = 70/194 (36%), Positives = 121/194 (62%), Gaps = 5/194 (2%)
Frame = +2
Query: 155 DVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKK-DGSD----RM 319
+ P++ + YR K V+ I +L + IIR S S +++P+ +V KK DG+ R+
Sbjct: 314 NTPIHTKSYRYPFVHKTEVKKQIESMLDQQIIRSSHSPWSAPVWVVPKKLDGTGNRKWRL 373
Query: 320 CVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFV 499
+DYR LN T+ +R+P+P I+D +D +GK +F++LD+ +GFHQ+ + + I+KTAF
Sbjct: 374 VIDYRKLNDKTISDRYPIPNINDILDSIGKAKYFSTLDLTSGFHQIEM-NPKDIAKTAFT 432
Query: 500 TPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNNL 679
GH+E+ +MP+GL NAP +QRV+ L L + + Y+DD++I S ++ + L ++
Sbjct: 433 VEGGHYEFTRMPFGLKNAPATFQRVMDSVLGDL-NGTICLFYLDDIIIFSPSLQKHLLDI 491
Query: 680 REVLQTLASAGFSV 721
+ V + L +A F +
Sbjct: 492 KMVFEKLRAANFKL 505
>AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse
transcriptase-like polymeraseprotein.
Length = 1059
Score = 136 bits (329), Expect = 3e-32
Identities = 76/196 (38%), Positives = 118/196 (60%), Gaps = 6/196 (3%)
Frame = +2
Query: 140 IKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKK-DGSD- 313
I+ SD P+ + Y+ + K+ V I++LL GIIR S+S Y SP+ +V KK D S
Sbjct: 188 IRTISDTPIYSKFYQYPMSLKDEVHKQISELLHDGIIRPSRSPYNSPVWIVPKKLDSSGK 247
Query: 314 ---RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASIS 484
R+ +DYR LN +TV +R+P+P I++ + +LG F+ LD+ +GFHQ+ LK ++ I
Sbjct: 248 KKYRVVIDYRKLNMVTVADRYPIPDINEVLAQLGDNKIFSVLDLKSGFHQILLK-ESDIE 306
Query: 485 KTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKV-ITYVDDVLILSNTVT 661
KTAF +G +E+ ++P+GL NAP ++QR + L I GK+ Y+DD++I S
Sbjct: 307 KTAFSINNGKYEFTRLPFGLKNAPSIFQRALDDILHEHI--GKICFIYIDDIIIFSKDDE 364
Query: 662 EGLNNLREVLQTLASA 709
NL + +TL A
Sbjct: 365 THYQNLDTIFRTLQQA 380
>AY050234-1|AAK84933.1| 1026|Drosophila melanogaster SD02026p
protein.
Length = 1026
Score = 127 bits (307), Expect = 1e-29
Identities = 63/180 (35%), Positives = 111/180 (61%)
Frame = +2
Query: 182 RLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVDYRALNSITVKE 361
RLS +E V+ + + + + I+R+S S AS I++VKKKDG+ R+CVDYR LN++ + +
Sbjct: 189 RLSEEEAIAVKKQVEEWVEQSIVRKSTSNVASRIVVVKKKDGTLRVCVDYRKLNTMVLMD 248
Query: 362 RFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPDGHFEYLKMPYG 541
FP+P +++ ++KL +FT++D+ GF + + ++AS TAFVT +G FE+ K P+G
Sbjct: 249 CFPVPIMEEVLEKLQSAKWFTTMDLQNGFFHVAV-EEASKPYTAFVTREGLFEFNKAPFG 307
Query: 542 LANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNNLREVLQTLASAGFSV 721
N+P + R + + LI++ + Y+DD+++ + T E + VL+ A G +
Sbjct: 308 FKNSPAAFIRFVQFIFQELINSNIMQLYMDDIIVYAATPEECMEKTEMVLKRAAEFGLKI 367
>Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia
polyprotein protein.
Length = 1333
Score = 126 bits (304), Expect = 3e-29
Identities = 62/180 (34%), Positives = 111/180 (61%)
Frame = +2
Query: 182 RLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDRMCVDYRALNSITVKE 361
RLS +E V+ + + + + I+R+S S AS I++V+KKDG+ R+CVDYR LN++ + +
Sbjct: 495 RLSEEEAIAVKKQVEEWVEQSIVRKSTSNVASRIVVVRKKDGTLRVCVDYRKLNTMVLMD 554
Query: 362 RFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAFVTPDGHFEYLKMPYG 541
FP+P +++ ++KL +FT++D+ GF + + ++AS TAFVT +G FE+ K P+G
Sbjct: 555 CFPVPIMEEVLEKLQSAKWFTTMDLQNGFFHVAV-EEASKPYTAFVTREGLFEFNKAPFG 613
Query: 542 LANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNNLREVLQTLASAGFSV 721
N+P + R + + LI++ + Y+DD+++ + T E + VL+ A G +
Sbjct: 614 FKNSPAAFIRFVQFIFQELINSNIMQLYMDDIIVYAATPEECMEKTEMVLKRAAEFGLKI 673
>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
Drosophila retrotransposon412 genome. ).
Length = 1237
Score = 126 bits (303), Expect = 4e-29
Identities = 66/190 (34%), Positives = 113/190 (59%), Gaps = 6/190 (3%)
Frame = +2
Query: 137 EIKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDG--S 310
+++LK D PV + YR + ++ + L+ I+ S S+Y SP++LV KK S
Sbjct: 306 QLRLKDDEPVYTKNYRSPHSQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNS 365
Query: 311 D----RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDAS 478
D R+ +DYR +N + ++FPLPRIDD +D+LG+ +F+ LD+ +GFHQ+ L D+ S
Sbjct: 366 DKKKWRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIEL-DEGS 424
Query: 479 ISKTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTV 658
T+F T +G + + ++P+GL AP +QR+++ I+ + Y+DD++++ +
Sbjct: 425 RDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSG-IEPSQAFLYMDDLIVIGCSE 483
Query: 659 TEGLNNLREV 688
L NL EV
Sbjct: 484 KHMLKNLTEV 493
>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
DNA polymerase protein.
Length = 1000
Score = 126 bits (303), Expect = 4e-29
Identities = 66/190 (34%), Positives = 113/190 (59%), Gaps = 6/190 (3%)
Frame = +2
Query: 137 EIKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDG--S 310
+++LK D PV + YR + ++ + L+ I+ S S+Y SP++LV KK S
Sbjct: 69 QLRLKDDEPVYTKNYRSPHSQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNS 128
Query: 311 D----RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDAS 478
D R+ +DYR +N + ++FPLPRIDD +D+LG+ +F+ LD+ +GFHQ+ L D+ S
Sbjct: 129 DKKKWRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIEL-DEGS 187
Query: 479 ISKTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTV 658
T+F T +G + + ++P+GL AP +QR+++ I+ + Y+DD++++ +
Sbjct: 188 RDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSG-IEPSQAFLYMDDLIVIGCSE 246
Query: 659 TEGLNNLREV 688
L NL EV
Sbjct: 247 KHMLKNLTEV 256
>U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse
transcriptase polyprotein protein.
Length = 1041
Score = 124 bits (299), Expect = 1e-28
Identities = 70/201 (34%), Positives = 115/201 (57%), Gaps = 7/201 (3%)
Frame = +2
Query: 140 IKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSD-- 313
I+ + D P+ + Y + + V + LL GIIR S S Y +P+ +V KK G+D
Sbjct: 180 IRTEDDQPIYSKLYPYPMGVSDFVNKETHALLKDGIIRPSSSPYNNPVWVVDKK-GTDEE 238
Query: 314 -----RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDAS 478
R+ +D+R LN T+ +++P+P + + LGK FFT+LD+ + FHQ+ L +
Sbjct: 239 GNTKKRLVIDFRKLNLKTIDDKYPIPNVVWILSNLGKARFFTTLDLKSAFHQI-LLAEKD 297
Query: 479 ISKTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTV 658
+KTAF +G +E+ ++P+GL NAP ++QR I ++ I + YVDDV+I SN +
Sbjct: 298 RAKTAFSVGNGKYEFCRLPFGLKNAPSIFQRAIDDVVRDRIGKSCYV-YVDDVIIFSNGI 356
Query: 659 TEGLNNLREVLQTLASAGFSV 721
+ +N++ VL L+ A V
Sbjct: 357 EDHVNDVAWVLDRLSGANMRV 377
>X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D.
melanogaster retrotransposongypsy gene fragment for
reverse transcriptase-like enzyme.).
Length = 930
Score = 122 bits (294), Expect = 5e-28
Identities = 73/202 (36%), Positives = 113/202 (55%), Gaps = 8/202 (3%)
Frame = +2
Query: 140 IKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSD-- 313
I+ + PV R Y + + V N + LL GIIR S+S Y SP +V KK G+D
Sbjct: 154 IRTVDNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKK-GTDAS 212
Query: 314 -----RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDAS 478
R+ +D+R LN T+ +R+P+P I + LGK FFT+LD+ +G+HQ+ L +
Sbjct: 213 GNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEH-D 271
Query: 479 ISKTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKV-ITYVDDVLILSNT 655
KT+F G +E+ ++P+GL NA ++QR + L+ I GK+ YVDDV+I S
Sbjct: 272 REKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQI--GKICYVYVDDVIIFSEN 329
Query: 656 VTEGLNNLREVLQTLASAGFSV 721
++ + ++ VL+ L A V
Sbjct: 330 ESDHVRHIDTVLKCLIDANMRV 351
>M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protein
protein.
Length = 1010
Score = 122 bits (294), Expect = 5e-28
Identities = 73/202 (36%), Positives = 113/202 (55%), Gaps = 8/202 (3%)
Frame = +2
Query: 140 IKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSD-- 313
I+ + PV R Y + + V N + LL GIIR S+S Y SP +V KK G+D
Sbjct: 149 IRTVDNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKK-GTDAF 207
Query: 314 -----RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDAS 478
R+ +D+R LN T+ +R+P+P I + LGK FFT+LD+ +G+HQ+ L +
Sbjct: 208 GNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEH-D 266
Query: 479 ISKTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKV-ITYVDDVLILSNT 655
KT+F G +E+ ++P+GL NA ++QR + L+ I GK+ YVDDV+I S
Sbjct: 267 REKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQI--GKICYVYVDDVIIFSEN 324
Query: 656 VTEGLNNLREVLQTLASAGFSV 721
++ + ++ VL+ L A V
Sbjct: 325 ESDHVRHIDTVLKCLIDANMRV 346
>EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 122 bits (294), Expect = 5e-28
Identities = 73/202 (36%), Positives = 113/202 (55%), Gaps = 8/202 (3%)
Frame = +2
Query: 140 IKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSD-- 313
I+ + PV R Y + + V N + LL GIIR S+S Y SP +V KK G+D
Sbjct: 184 IRTVDNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKK-GTDAF 242
Query: 314 -----RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDAS 478
R+ +D+R LN T+ +R+P+P I + LGK FFT+LD+ +G+HQ+ L +
Sbjct: 243 GNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEH-D 301
Query: 479 ISKTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKV-ITYVDDVLILSNT 655
KT+F G +E+ ++P+GL NA ++QR + L+ I GK+ YVDDV+I S
Sbjct: 302 REKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQI--GKICYVYVDDVIIFSEN 359
Query: 656 VTEGLNNLREVLQTLASAGFSV 721
++ + ++ VL+ L A V
Sbjct: 360 ESDHVRHIDTVLKCLIDANMRV 381
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 539 GLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTV 658
G + P + +R+ +TLK LID G Y+ V L N +
Sbjct: 18 GRSRLPFIERRLAGRTLKMLIDTGAAKNYIRPVKELKNVM 57
>EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 122 bits (294), Expect = 5e-28
Identities = 73/202 (36%), Positives = 113/202 (55%), Gaps = 8/202 (3%)
Frame = +2
Query: 140 IKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSD-- 313
I+ + PV R Y + + V N + LL GIIR S+S Y SP +V KK G+D
Sbjct: 184 IRTVDNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKK-GTDAF 242
Query: 314 -----RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDAS 478
R+ +D+R LN T+ +R+P+P I + LGK FFT+LD+ +G+HQ+ L +
Sbjct: 243 GNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEH-D 301
Query: 479 ISKTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKV-ITYVDDVLILSNT 655
KT+F G +E+ ++P+GL NA ++QR + L+ I GK+ YVDDV+I S
Sbjct: 302 REKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQI--GKICYVYVDDVIIFSEN 359
Query: 656 VTEGLNNLREVLQTLASAGFSV 721
++ + ++ VL+ L A V
Sbjct: 360 ESDHVRHIDTVLKCLIDANMRV 381
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 539 GLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTV 658
G + P + +R+ +TLK LID G Y+ V L N +
Sbjct: 18 GRSRLPFIERRLAGRTLKMLIDTGAAKNYIRPVKELKNVM 57
>AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol
protein.
Length = 1463
Score = 122 bits (294), Expect = 5e-28
Identities = 73/202 (36%), Positives = 113/202 (55%), Gaps = 8/202 (3%)
Frame = +2
Query: 140 IKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSD-- 313
I+ + PV R Y + + V N + LL GIIR S+S Y SP +V KK G+D
Sbjct: 602 IRTVDNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKK-GTDAF 660
Query: 314 -----RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDAS 478
R+ +D+R LN T+ +R+P+P I + LGK FFT+LD+ +G+HQ+ L +
Sbjct: 661 GNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEH-D 719
Query: 479 ISKTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKV-ITYVDDVLILSNT 655
KT+F G +E+ ++P+GL NA ++QR + L+ I GK+ YVDDV+I S
Sbjct: 720 REKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQI--GKICYVYVDDVIIFSEN 777
Query: 656 VTEGLNNLREVLQTLASAGFSV 721
++ + ++ VL+ L A V
Sbjct: 778 ESDHVRHIDTVLKCLIDANMRV 799
>AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p
protein.
Length = 825
Score = 122 bits (293), Expect = 7e-28
Identities = 63/192 (32%), Positives = 111/192 (57%), Gaps = 6/192 (3%)
Frame = +2
Query: 137 EIKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSD- 313
+I+L+ D P + YR ++ + + L+ I+ + SEY SP++LV KK D
Sbjct: 200 KIRLRDDEPSYIKNYRTPHSQQAEISRQVTKLIEDKIVEPAVSEYNSPLLLVPKKSLPDS 259
Query: 314 -----RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDAS 478
R+ +DYR +N + ++FPLPRIDD +D+LG+ +F+ LD+ +GFHQ+ L++D S
Sbjct: 260 KEKKWRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELEED-S 318
Query: 479 ISKTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTV 658
+ T+F T G + + ++PYGL AP +QR+++ L + + Y+DD++++ +
Sbjct: 319 RNITSFSTSSGSYRFTRLPYGLKIAPNSFQRMMTMAFTGL-EPSQAFLYMDDLIVIGCSE 377
Query: 659 TEGLNNLREVLQ 694
NL V +
Sbjct: 378 KHMTKNLTNVFE 389
>DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 121 bits (292), Expect = 9e-28
Identities = 73/202 (36%), Positives = 113/202 (55%), Gaps = 8/202 (3%)
Frame = +2
Query: 140 IKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSD-- 313
I+ + PV R Y + + V N + LL GIIR S+S Y SP +V KK G+D
Sbjct: 149 IRTVDNEPVYSRAYPNLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKK-GTDAF 207
Query: 314 -----RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDAS 478
R+ +D+R LN T+ +R+P+P I + LGK FFT+LD+ +G+HQ+ L +
Sbjct: 208 GNPNKRLVIDFRKLNERTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEH-D 266
Query: 479 ISKTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKV-ITYVDDVLILSNT 655
KT+F G +E+ ++P+GL NA ++QR + L+ I GK+ YVDDV+I S
Sbjct: 267 REKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQI--GKICYVYVDDVIIFSEN 324
Query: 656 VTEGLNNLREVLQTLASAGFSV 721
++ + ++ VL+ L A V
Sbjct: 325 ESDHVRHIDTVLKCLIDANMRV 346
>DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 121 bits (292), Expect = 9e-28
Identities = 73/202 (36%), Positives = 113/202 (55%), Gaps = 8/202 (3%)
Frame = +2
Query: 140 IKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSD-- 313
I+ + PV R Y + + V N + LL GIIR S+S Y SP +V KK G+D
Sbjct: 149 IRTVDNEPVYSRAYPNLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKK-GTDAF 207
Query: 314 -----RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDAS 478
R+ +D+R LN T+ +R+P+P I + LGK FFT+LD+ +G+HQ+ L +
Sbjct: 208 GNPNKRLVIDFRKLNERTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEH-D 266
Query: 479 ISKTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKV-ITYVDDVLILSNT 655
KT+F G +E+ ++P+GL NA ++QR + L+ I GK+ YVDDV+I S
Sbjct: 267 REKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQI--GKICYVYVDDVIIFSEN 324
Query: 656 VTEGLNNLREVLQTLASAGFSV 721
++ + ++ VL+ L A V
Sbjct: 325 ESDHVRHIDTVLKCLIDANMRV 346
>AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprotein
protein.
Length = 437
Score = 120 bits (290), Expect = 2e-27
Identities = 62/151 (41%), Positives = 98/151 (64%), Gaps = 5/151 (3%)
Frame = +2
Query: 140 IKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKK-DGSD- 313
I+ SD P+ + Y+ + K+ V I++LL GIIR S+S Y SP+ +V KK D S
Sbjct: 31 IRTISDTPIYSKFYQYPMSLKDEVHKQISELLHDGIIRPSRSPYNSPVWIVPKKLDSSGK 90
Query: 314 ---RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASIS 484
R+ +DYR LN +TV +R+P+P I++ + +LG F+ LD+ +GFHQ+ LK ++ I
Sbjct: 91 KKYRVVIDYRKLNMVTVADRYPIPDINEVLAQLGDNKIFSVLDLKSGFHQILLK-ESDIE 149
Query: 485 KTAFVTPDGHFEYLKMPYGLANAPVVYQRVI 577
KTAF +G +E+ ++P+GL NAP ++QR +
Sbjct: 150 KTAFSINNGKYEFTRLPFGLKNAPSIFQRAL 180
>AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein.
Length = 994
Score = 119 bits (287), Expect = 3e-27
Identities = 63/192 (32%), Positives = 110/192 (57%), Gaps = 6/192 (3%)
Frame = +2
Query: 137 EIKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSD- 313
+++L PV + YR++ +K + + L+ GI+ S SEY SP++LV KK +
Sbjct: 61 KLRLGEKTPVYIKNYRMADSQKPEIARQVKKLIDDGIVEPSMSEYNSPLLLVPKKPLPNS 120
Query: 314 -----RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDAS 478
R+ VDYR +N + ++FPLPRI+D +D+LG+ +F+ LD+ +GFHQ+ L +
Sbjct: 121 TEKRWRLAVDYRQINKKLLSDKFPLPRIEDILDQLGRAKYFSCLDLMSGFHQIEL-EKRY 179
Query: 479 ISKTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTV 658
T+F T +G + + ++PYGL AP +QR ++ L + + Y+DD++++ +
Sbjct: 180 RDITSFSTANGSYRFTRLPYGLKVAPNSFQRRMTLAFSGL-EPSQAFLYMDDLVVIGCSE 238
Query: 659 TEGLNNLREVLQ 694
L NL V +
Sbjct: 239 KHMLKNLTNVFE 250
>AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 1013
Score = 119 bits (287), Expect = 3e-27
Identities = 70/201 (34%), Positives = 112/201 (55%), Gaps = 7/201 (3%)
Frame = +2
Query: 140 IKLKSDVPVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSD-- 313
I+ + P+ + Y + + V I +LL GII++S+S Y +PI +V KK D
Sbjct: 151 IRTVDEEPIYAKLYPYPMGAADFVNGEIQELLKNGIIQKSKSPYNNPIWVVDKKGTDDAG 210
Query: 314 ----RMCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASI 481
R+ +D+R LN TV +R+P+P I + LGK +FT+LD+ +G+HQ+ L +
Sbjct: 211 NKKMRLVLDFRKLNERTVPDRYPMPNISMILGNLGKAKYFTTLDLKSGYHQITLA-ERDR 269
Query: 482 SKTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGK-VITYVDDVLILSNTV 658
KTAF G +E+ ++P+GL NA ++QR I L+ I GK YVDDV+I S
Sbjct: 270 EKTAFAVNGGKYEFRRLPFGLRNAASIFQRTIDDILREQI--GKFCYVYVDDVIIFSEDE 327
Query: 659 TEGLNNLREVLQTLASAGFSV 721
+ + ++ VL++L A +
Sbjct: 328 NDHVKHVDWVLKSLYDANMRI 348
>AF541949-2|AAN34652.1| 826|Drosophila melanogaster pol protein
protein.
Length = 826
Score = 51.2 bits (117), Expect = 1e-06
Identities = 24/83 (28%), Positives = 52/83 (62%)
Frame = +2
Query: 440 TGFHQLPLKDDASISKTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVI 619
+GFHQ+ L+++ S + T+F T +G + + ++P+GL AP +QR+++ + L + +
Sbjct: 2 SGFHQIELEEN-SRNITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTISFSGL-EPSQAF 59
Query: 620 TYVDDVLILSNTVTEGLNNLREV 688
Y+DD++++ + + NL +V
Sbjct: 60 LYMDDLMVIGCSEKHMIKNLTDV 82
>AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 826
Score = 51.2 bits (117), Expect = 1e-06
Identities = 24/83 (28%), Positives = 52/83 (62%)
Frame = +2
Query: 440 TGFHQLPLKDDASISKTAFVTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVI 619
+GFHQ+ L+++ S + T+F T +G + + ++P+GL AP +QR+++ + L + +
Sbjct: 2 SGFHQIELEEN-SRNITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTISFSGL-EPSQAF 59
Query: 620 TYVDDVLILSNTVTEGLNNLREV 688
Y+DD++++ + + NL +V
Sbjct: 60 LYMDDLMVIGCSEKHMIKNLTDV 82
>AJ487856-1|CAD32253.1| 1830|Drosophila melanogaster hypothetical
protein protein.
Length = 1830
Score = 38.7 bits (86), Expect = 0.008
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Frame = +2
Query: 515 FEYLKMPYGLANAPVVYQRVISKTLK----PLIDAGKVIT---YVDDVLILSNTVTEGLN 673
FE + +G+ AP + RV+ + + P +A ++I YVDDVL +N+V E +
Sbjct: 933 FELKTVTFGVNCAPFLAIRVLQQLAEDIQVPFPNASRIIQQHMYVDDVLAGANSVNEAQS 992
Query: 674 NLREVLQTLASAGF 715
++RE+ L+++GF
Sbjct: 993 SIRELQAALSASGF 1006
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,449,794
Number of Sequences: 53049
Number of extensions: 624621
Number of successful extensions: 1134
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3211306956
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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