Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13b01
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...   132   2e-31
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...   132   2e-31
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...   132   2e-31
U40955-6|AAA81754.1|  539|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AL032625-1|CAA21523.1|  326|Caenorhabditis elegans Hypothetical ...    28   5.8  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score =  132 bits (320), Expect = 2e-31
 Identities = 69/195 (35%), Positives = 112/195 (57%), Gaps = 1/195 (0%)
 Frame = +2

Query: 140  IKLKSDV-PVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDR 316
            I+LK    P+ Q+P  + +  K  +R +I  +L + +IRES+S ++SP++LVKKKDGS R
Sbjct: 1020 IELKEGAEPIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIR 1079

Query: 317  MCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAF 496
            MC+DYR +N +      PLP I+  +  L     +T  DM  GF Q+PL D+ S   TAF
Sbjct: 1080 MCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPL-DEKSKEITAF 1138

Query: 497  VTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNN 676
                  FE+  +P+GL  +P ++Q  + + +  L+     + YVDD+LI S  + + L +
Sbjct: 1139 AIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLGVCAFV-YVDDLLIASKDMEQHLQD 1197

Query: 677  LREVLQTLASAGFSV 721
            ++E L  +  +G  +
Sbjct: 1198 VKEALTRIRKSGMKL 1212


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score =  132 bits (320), Expect = 2e-31
 Identities = 69/195 (35%), Positives = 112/195 (57%), Gaps = 1/195 (0%)
 Frame = +2

Query: 140  IKLKSDV-PVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDR 316
            I+LK    P+ Q+P  + +  K  +R +I  +L + +IRES+S ++SP++LVKKKDGS R
Sbjct: 923  IELKEGAEPIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIR 982

Query: 317  MCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAF 496
            MC+DYR +N +      PLP I+  +  L     +T  DM  GF Q+PL D+ S   TAF
Sbjct: 983  MCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPL-DEKSKEITAF 1041

Query: 497  VTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNN 676
                  FE+  +P+GL  +P ++Q  + + +  L+     + YVDD+LI S  + + L +
Sbjct: 1042 AIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLGVCAFV-YVDDLLIASKDMEQHLQD 1100

Query: 677  LREVLQTLASAGFSV 721
            ++E L  +  +G  +
Sbjct: 1101 VKEALTRIRKSGMKL 1115


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score =  132 bits (320), Expect = 2e-31
 Identities = 69/195 (35%), Positives = 112/195 (57%), Gaps = 1/195 (0%)
 Frame = +2

Query: 140  IKLKSDV-PVNQRPYRLSIDEKNRVRNIINDLLAKGIIRESQSEYASPIILVKKKDGSDR 316
            I+LK    P+ Q+P  + +  K  +R +I  +L + +IRES+S ++SP++LVKKKDGS R
Sbjct: 934  IELKEGAEPIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIR 993

Query: 317  MCVDYRALNSITVKERFPLPRIDDHIDKLGKYIFFTSLDMATGFHQLPLKDDASISKTAF 496
            MC+DYR +N +      PLP I+  +  L     +T  DM  GF Q+PL D+ S   TAF
Sbjct: 994  MCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPL-DEKSKEITAF 1052

Query: 497  VTPDGHFEYLKMPYGLANAPVVYQRVISKTLKPLIDAGKVITYVDDVLILSNTVTEGLNN 676
                  FE+  +P+GL  +P ++Q  + + +  L+     + YVDD+LI S  + + L +
Sbjct: 1053 AIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLGVCAFV-YVDDLLIASKDMEQHLQD 1111

Query: 677  LREVLQTLASAGFSV 721
            ++E L  +  +G  +
Sbjct: 1112 VKEALTRIRKSGMKL 1126


>U40955-6|AAA81754.1|  539|Caenorhabditis elegans Hypothetical
           protein F48B9.1 protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
 Frame = +2

Query: 227 DLLAKGIIRES---QSEYASPIILVKKKDGSDRMCVDYRALN--SITVKERFP---LPRI 382
           D +  GI+ E      E  SPI L+   DGS+    ++ +LN   +   ER P   L  I
Sbjct: 35  DPIENGIVIEEIKDHEENKSPISLIVSPDGSENSTEEFNSLNVSLLPPSERKPSRNLEDI 94

Query: 383 DDHIDKLGKYI--FFTSLDMATGFHQLPLKDDASISKTAFV 499
           D  +D+L       F +  MA G +Q  L D    S T ++
Sbjct: 95  DRTLDELQDLAEDAFLTAQMAQG-NQAKLFDKLFESSTVYL 134


>AL032625-1|CAA21523.1|  326|Caenorhabditis elegans Hypothetical
           protein Y37H9A.2 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 672 LSPSVTVFDRIKTSSTYVMTLPASIRGF 589
           +SPS ++F R+ T S  + T+PA I  F
Sbjct: 298 VSPSRSIFSRLPTDSLTLHTIPARISNF 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,800,314
Number of Sequences: 27780
Number of extensions: 332936
Number of successful extensions: 718
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)