Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13a17
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    50   3e-07
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    38   0.002
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    30   0.25 
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    30   0.33 
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    29   0.76 
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    27   1.8  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    27   3.1  
SPBP23A10.03c |||ACN9 family mitochondrial protein|Schizosacchar...    25   7.1  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    25   7.1  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    25   9.3  

>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 22/52 (42%), Positives = 34/52 (65%)
 Frame = +2

Query: 419 KTQFDKNVVTHFEVQEQVCDYIFSHLGIDSEGAVNHPIVMTEAFVTPNYSRA 574
           ++ F++NV++++++ EQV DY F  LGID    + HPI MTE    P Y R+
Sbjct: 84  RSPFERNVISNWDLMEQVLDYTFLKLGID---RMEHPICMTEPLANPTYVRS 132



 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 4/45 (8%)
 Frame = +1

Query: 199 PTLKFEH----IPLIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
           PT  F++    IPL+IDNGS+Q R GW   ++P L+F NL++R R
Sbjct: 14  PTPSFQNVSNDIPLVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +3

Query: 579 MSELLFEGYGIPAVSYGVDSLF 644
           M+ELLFE Y  P+V+YG+D LF
Sbjct: 134 MTELLFELYNAPSVAYGIDGLF 155


>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +1

Query: 226 LIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
           L+IDNGS  C+ G++  + P  +F +++ RPR
Sbjct: 8   LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 39


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 214 EHIPLIIDNGSYQCRVGWSISEEPHLIFKNLIARP 318
           E  P+++DNG+   +VG++    P   F +++ RP
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 10/32 (31%), Positives = 23/32 (71%)
 Frame = +1

Query: 217 HIPLIIDNGSYQCRVGWSISEEPHLIFKNLIA 312
           ++P+I+DNG+   ++G++ ++ P  +F  +IA
Sbjct: 5   NVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIA 36


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +1

Query: 133 DEENVIIFKDYKTVPD---VVH-EYSPTLKFEHIPLIIDNGSYQCRVGWSISEEPHLIFK 300
           D  +++I  +++ +PD   + H  Y PTL F    +++ +       G      PHLIF+
Sbjct: 133 DITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDIPN--TGTMSEAYPHLIFE 190

Query: 301 NLIAR 315
           NL ++
Sbjct: 191 NLTSK 195


>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +1

Query: 271 ISEEPHLIFKNLIARPRKDRCKKDAEPPVTPPIQIGNDIINIEAVRFQLKNSVRQKCSDT 450
           +SE    + +  +A   KD+   + E  +TP ++I     N+E VRFQ+ +S+R      
Sbjct: 264 VSEIQKAVSEKRVAPYSKDKKCWNLEFGLTP-VEILGHKGNVENVRFQITDSIRTDAESK 322

Query: 451 F 453
           F
Sbjct: 323 F 323


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 476 DYIFSHLGIDSEGAVNHPIVMTEAFVTPNYSR 571
           D +  HL +  EG  NH I     F+ P  SR
Sbjct: 792 DKVSQHLSLRDEGTPNHLIKHNSYFLLPTVSR 823


>SPBP23A10.03c |||ACN9 family mitochondrial
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 220 YVQISVLESIREQRLGQFYSL*K 152
           Y    +LES+ +Q++GQ Y L K
Sbjct: 84  YSNTDLLESLNDQQIGQLYELSK 106


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +1

Query: 208 KFEHIP-----LIIDNGSYQCRVGWSISEEPHLIFKNLIARPRKDRCKKDAEPPVTPPIQ 372
           ++EHI      +++D  SY  R+G  ISE   L+ +N + + +        E  VT  I+
Sbjct: 384 QYEHIQSVYKNVLLDRESYIMRLGNKISENNELLNENRVLKEKLQTYLDKKESNVTSKIK 443


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 259 VGWSISEEPHLIFKNLIARPRKDRCKKDAEPPVT 360
           +GW + +   L  KN I     +  +KD + PVT
Sbjct: 347 IGWPLCQPSDLKSKNKIGNVSIEEGQKDVKSPVT 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,086
Number of Sequences: 5004
Number of extensions: 46684
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)