Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13a17
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238... 48 5e-06
12_02_1282 + 27528159-27529148,27529549-27529614 33 0.19
12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847,323... 33 0.19
11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930,306... 33 0.19
10_08_0597 + 19089616-19089675,19089789-19090182,19090451-190910... 33 0.19
05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-32... 33 0.19
03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137... 33 0.19
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731... 33 0.19
01_07_0285 - 42476767-42476832,42476990-42477603,42477821-424782... 33 0.19
05_04_0450 - 21356877-21356942,21357482-21358095,21358173-213585... 32 0.34
01_06_1455 + 37504175-37504231,37504357-37504750,37504865-375054... 32 0.34
08_01_0254 + 2078380-2078392,2078487-2078578,2079579-2079698,207... 30 1.8
04_04_1515 + 34117383-34117732,34117833-34117918,34118227-341182... 30 1.8
07_01_1074 - 9599465-9599545,9599632-9599690,9600070-9600143,960... 29 4.2
11_03_0110 + 10106214-10106327,10106404-10106493,10106598-101067... 28 5.5
03_05_0688 + 26762668-26762893,26763027-26763101,26763865-267640... 27 9.7
>01_01_0292 -
2387653-2387711,2388061-2388684,2388814-2389104,
2389338-2389390,2390496-2390968,2391090-2391432,
2391793-2391911,2392081-2392512,2392657-2392747,
2392833-2392942,2393681-2393875,2394581-2394622,
2395144-2395268,2395856-2395926,2396047-2396147
Length = 1042
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = +2
Query: 419 KTQFDKNVVTHFEVQEQVCDYIFSHLGIDSEGAVNHPIVMTEAFVTPNYSRA 574
++ FD +VV FE E + D+ F LG SE V HPI+MTE P++SRA
Sbjct: 83 RSPFDDDVVYQFEYMEYILDFGFDRLGATSE--VGHPILMTECECNPSFSRA 132
Score = 43.6 bits (98), Expect = 1e-04
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +1
Query: 223 PLIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
P++IDNG+ R+GW+ EP + F+N++ RPR
Sbjct: 21 PIVIDNGASTFRIGWAGEAEPRVAFRNIVQRPR 53
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 579 MSELLFEGYGIPAV 620
MSELLFE YG+P++
Sbjct: 134 MSELLFETYGVPSI 147
>12_02_1282 + 27528159-27529148,27529549-27529614
Length = 351
Score = 33.1 bits (72), Expect = 0.19
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 223 PLIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
PL+ DNG+ + G++ + P +F +++ RPR
Sbjct: 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
>12_01_0409 -
3230853-3230918,3231372-3231994,3232454-3232847,
3233000-3233059
Length = 380
Score = 33.1 bits (72), Expect = 0.19
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 223 PLIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
PL+ DNG+ + G++ + P +F +++ RPR
Sbjct: 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
>11_01_0403 +
3059650-3059709,3059807-3060200,3060275-3060930,
3060979-3061044
Length = 391
Score = 33.1 bits (72), Expect = 0.19
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 223 PLIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
PL+ DNG+ + G++ + P +F +++ RPR
Sbjct: 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
>10_08_0597 +
19089616-19089675,19089789-19090182,19090451-19091064,
19091160-19091225
Length = 377
Score = 33.1 bits (72), Expect = 0.19
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 223 PLIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
PL+ DNG+ + G++ + P +F +++ RPR
Sbjct: 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
>05_01_0047 -
323097-323162,323287-323900,324233-324626,324718-324777
Length = 377
Score = 33.1 bits (72), Expect = 0.19
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 223 PLIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
PL+ DNG+ + G++ + P +F +++ RPR
Sbjct: 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
>03_06_0585 -
34912159-34912224,34912634-34913247,34913350-34913734,
34913824-34913883
Length = 374
Score = 33.1 bits (72), Expect = 0.19
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 223 PLIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
PL+ DNG+ + G++ + P +F +++ RPR
Sbjct: 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
>03_05_0926 +
28871800-28871859,28871943-28872336,28872586-28873199,
28873281-28873346
Length = 377
Score = 33.1 bits (72), Expect = 0.19
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 223 PLIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
PL+ DNG+ + G++ + P +F +++ RPR
Sbjct: 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
>01_07_0285 -
42476767-42476832,42476990-42477603,42477821-42478214,
42478301-42478360
Length = 377
Score = 33.1 bits (72), Expect = 0.19
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 223 PLIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
PL+ DNG+ + G++ + P +F +++ RPR
Sbjct: 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 41
>05_04_0450 -
21356877-21356942,21357482-21358095,21358173-21358566,
21358648-21358704
Length = 376
Score = 32.3 bits (70), Expect = 0.34
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 223 PLIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
P++ DNG+ + G++ + P +F +++ RPR
Sbjct: 8 PIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 40
>01_06_1455 +
37504175-37504231,37504357-37504750,37504865-37505478,
37506021-37506086
Length = 376
Score = 32.3 bits (70), Expect = 0.34
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 223 PLIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
P++ DNG+ + G++ + P +F +++ RPR
Sbjct: 8 PIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR 40
>08_01_0254 +
2078380-2078392,2078487-2078578,2079579-2079698,
2079924-2080097,2080184-2080257,2080847-2080927,
2081306-2081366,2081437-2081486,2082278-2082332,
2082599-2082676,2082757-2082810,2083703-2083756,
2083846-2083906,2084229-2084280,2085118-2085184,
2085393-2085452,2085546-2085608,2085752-2085814,
2086337-2086401,2086620-2086688,2086742-2086847
Length = 503
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 226 LIIDNGSYQCRVGWSISEEPHLIFKNL 306
++ID GSY C+ G++ + P +F +L
Sbjct: 10 IVIDVGSYSCKAGYAGDDTPKAVFPSL 36
>04_04_1515 +
34117383-34117732,34117833-34117918,34118227-34118297,
34118457-34118524,34118692-34118753,34119010-34119107,
34119545-34119626,34119935-34120077,34120233-34120381,
34120461-34120594,34120714-34120832,34120926-34121014,
34121398-34121515
Length = 522
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 9/41 (21%)
Frame = +1
Query: 175 PDVVHEYSPTLKFEHI---------PLIIDNGSYQCRVGWS 270
P + ++ SP L F+H+ +I+D GS C+ GWS
Sbjct: 116 PGLYYDSSPQLSFKHVYTRRAVVPGSIIVDGGSGYCKYGWS 156
>07_01_1074 -
9599465-9599545,9599632-9599690,9600070-9600143,
9600797-9600996,9601074-9601365,9601665-9602411,
9602653-9602696,9602714-9602827,9603590-9603838,
9603922-9603927
Length = 621
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 452 FEVQEQVCDYIFSHLGIDSEGAVN 523
F + EQ+C +IF+H+ I S+GA N
Sbjct: 499 FGLAEQLCGFIFNHI-ISSDGAYN 521
>11_03_0110 +
10106214-10106327,10106404-10106493,10106598-10106795,
10106909-10107064,10107271-10107321,10107415-10107555,
10107643-10108014
Length = 373
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 208 KFEHIPLIIDNGSYQCRVGWSISEEPHLIFKNLI 309
+F +++ NG + VGWS+ +PHL NL+
Sbjct: 166 RFSGAIVVLKNGGSRVAVGWSV--DPHLYGDNLV 197
>03_05_0688 +
26762668-26762893,26763027-26763101,26763865-26764032,
26764983-26765114,26765538-26765677,26765840-26765908,
26766325-26766435,26766854-26766973,26768223-26768324,
26769608-26769778,26769865-26769944,26770119-26770182
Length = 485
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +2
Query: 470 VCDYIFSHLGIDSEGAVNHPIVMTEAFVTPNYSRAIDVRTFI 595
+C Y+ LG D NH MT F + I V+ F+
Sbjct: 136 LCKYLVEELGFDVNAEANHDSGMTPLFCAVLDGQEITVKYFL 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,135,910
Number of Sequences: 37544
Number of extensions: 270096
Number of successful extensions: 634
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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