Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13a17
(644 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 37 0.011
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 37 0.011
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 37 0.011
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 37 0.011
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 37 0.011
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 37 0.011
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 37 0.011
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 37 0.011
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 37 0.011
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 37 0.011
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 37 0.011
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 37 0.011
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 37 0.011
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 34 0.075
U64844-5|AAM45362.1| 368|Caenorhabditis elegans Hypothetical pr... 31 0.92
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 28 6.5
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 28 6.5
AC024838-7|AAF60820.1| 381|Caenorhabditis elegans Hypothetical ... 28 6.5
AC024838-3|AAF60821.1| 381|Caenorhabditis elegans Hypothetical ... 28 6.5
AC024799-1|AAK72316.1| 349|Caenorhabditis elegans Serpentine re... 28 6.5
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 37.1 bits (82), Expect = 0.011
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 226 LIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
L++DNGS C+ G++ + P +F +++ RPR
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 39
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 37.1 bits (82), Expect = 0.011
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 226 LIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
L++DNGS C+ G++ + P +F +++ RPR
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 37.1 bits (82), Expect = 0.011
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 226 LIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
L++DNGS C+ G++ + P +F +++ RPR
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 37.1 bits (82), Expect = 0.011
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 226 LIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
L++DNGS C+ G++ + P +F +++ RPR
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 37.1 bits (82), Expect = 0.011
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 226 LIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
L++DNGS C+ G++ + P +F +++ RPR
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 37.1 bits (82), Expect = 0.011
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 226 LIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
L++DNGS C+ G++ + P +F +++ RPR
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 226 LIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
LI+DNGS C+ G++ + P +F +++ RPR
Sbjct: 9 LILDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 37.1 bits (82), Expect = 0.011
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 226 LIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
L++DNGS C+ G++ + P +F +++ RPR
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 37.1 bits (82), Expect = 0.011
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 226 LIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
L++DNGS C+ G++ + P +F +++ RPR
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 37.1 bits (82), Expect = 0.011
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 226 LIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
L++DNGS C+ G++ + P +F +++ RPR
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 37.1 bits (82), Expect = 0.011
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 226 LIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
L++DNGS C+ G++ + P +F +++ RPR
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 37.1 bits (82), Expect = 0.011
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 226 LIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
L++DNGS C+ G++ + P +F +++ RPR
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 37.1 bits (82), Expect = 0.011
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 226 LIIDNGSYQCRVGWSISEEPHLIFKNLIARPR 321
L++DNGS C+ G++ + P +F +++ RPR
Sbjct: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 34.3 bits (75), Expect = 0.075
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 223 PLIIDNGSYQCRVGWSISEEPHLIFKNLIARPRKDR 330
P++IDNGS + G++ ++P + F N + RP+ R
Sbjct: 10 PVVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHR 45
>U64844-5|AAM45362.1| 368|Caenorhabditis elegans Hypothetical
protein T22F3.2b protein.
Length = 368
Score = 30.7 bits (66), Expect = 0.92
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 328 RCKKDAEPPVTPPIQIGNDIINIEAVRFQLKNSVRQKCSD 447
+CKK ++ PV P + I+ + RF LKNS + + D
Sbjct: 244 KCKKKSDAPVKPTLLRAPQILLMHISRFSLKNSEKWETLD 283
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 238 NGSYQCR--VGWSISEEPHLIFKNLIARPRKDRCKKDAE 348
NG Y+C VG S + + N ARP + C KDA+
Sbjct: 50 NGQYRCECPVGVSRLADGRCLVVNECARPSLNACHKDAQ 88
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 238 NGSYQCR--VGWSISEEPHLIFKNLIARPRKDRCKKDAE 348
NG Y+C VG S + + N ARP + C KDA+
Sbjct: 50 NGQYRCECPVGVSRLADGRCLVVNECARPSLNACHKDAQ 88
>AC024838-7|AAF60820.1| 381|Caenorhabditis elegans Hypothetical
protein Y59E9AL.2 protein.
Length = 381
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 238 NGSYQCRVGWSISEEPHLIFKNLIARPRKDRCKKDAEPPVTPPI 369
NG +VG ++E ++I +N I P C+ +PP PPI
Sbjct: 148 NGKVIKQVGPQLNEM-YIITRNCIGGPPHCECENCPKPPPPPPI 190
>AC024838-3|AAF60821.1| 381|Caenorhabditis elegans Hypothetical
protein Y59E9AL.3 protein.
Length = 381
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 238 NGSYQCRVGWSISEEPHLIFKNLIARPRKDRCKKDAEPPVTPPI 369
NG +VG ++E ++I +N I P C+ +PP PPI
Sbjct: 148 NGKVIKQVGPQLNEM-YIITRNCIGGPPHCECENCPKPPPPPPI 190
>AC024799-1|AAK72316.1| 349|Caenorhabditis elegans Serpentine
receptor, class x protein4 protein.
Length = 349
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -3
Query: 285 RLFRYRPAYTTLIRTIVYNQRYMFKFQCWRVFVNNVWDSFIVFKNYN 145
++F +R ++ +I + +MFK Q W + V+D + +YN
Sbjct: 120 KIFTFRTTILLIVLSIPVSLGFMFKSQYWNLCCTFVYDHNYLSYSYN 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,116,195
Number of Sequences: 27780
Number of extensions: 267064
Number of successful extensions: 730
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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