Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13a16
         (626 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    25   0.69 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   0.69 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.8  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   3.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.8  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   6.4  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   6.4  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   8.4  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 254 DLNAIMFNCAEIKLNKGQMLFQTKIYRPD 340
           D N       EI LN   +LF  K++RP+
Sbjct: 210 DCNKNTSTSKEIALNNDVLLFFVKVFRPE 238


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = +3

Query: 393 KLKMXXXXXXXXQPPLSMSKKKTPTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSEL 572
           K+K         + PL++++    T  E + KK S+ E F   R K L  ++     +  
Sbjct: 64  KIKSCRPFKAYIKDPLTLAQGLVST--EMLLKKDSS-EAFNEFRTKILAQVHGTNNGTNK 120

Query: 573 LLHYLYDDQQNKNSD 617
            +  L    QNKN D
Sbjct: 121 NMRRLSTTTQNKNDD 135


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 233 NCTKYYSCRTTLQNRRFC 180
           NC  YY CR+ L     C
Sbjct: 571 NCAAYYVCRSGLSYHLSC 588


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +3

Query: 129 LAPILSRWLARRNLDCCTKTPILQCRAATIVFCAIWCKTANTILT 263
           L P+L R    RN+   T   +L      I    +W K    IL+
Sbjct: 728 LCPVLLRVSILRNIIVGTLMMVLGTGCVRIKITGVWLKFLRVILS 772


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 490  FFEIDSNSVGVFFLLIDSGGC 428
            F E+ SNS+ +       GGC
Sbjct: 1499 FIEVSSNSITLHLSAWSDGGC 1519


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 479 DFEENIDDGDVPAP 520
           D ++++D+GD+P P
Sbjct: 241 DKDQDMDEGDLPLP 254


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 317 QTKIYRPDNNKTDAAVNTSS 376
           Q + YRP  N T    NTSS
Sbjct: 244 QMQSYRPTGNITPHGSNTSS 263


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/20 (35%), Positives = 8/20 (40%)
 Frame = -1

Query: 239 APNCTKYYSCRTTLQNRRFC 180
           A  C KYY C       + C
Sbjct: 49  AEQCDKYYECNDGQITEKLC 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,383
Number of Sequences: 336
Number of extensions: 2313
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)