Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13a16
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   1.3  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.1  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   6.8  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   6.8  
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    25   6.8  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   6.8  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    25   9.0  

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.0 bits (52), Expect(2) = 1.3
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 65  SEDENVLDFIIED 103
           SED+N+LDFI+ D
Sbjct: 624 SEDDNLLDFILRD 636



 Score = 21.0 bits (42), Expect(2) = 1.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 38  DIIVNAQINSEDEN 79
           ++IVN +I S DEN
Sbjct: 585 EVIVNGRIISHDEN 598


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 504 ETFQRLRNKNLTTLNKIKYDSELLLHYL 587
           + ++    +NLT  N+++ D +  +HYL
Sbjct: 146 DVYEFFGGENLTLFNQVRVDCQCYIHYL 173


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +2

Query: 53  AQINSEDENVLDFIIEDEYYLKKR--GVGAHIIKVASSPQLRLLYKNAYSAVSCGNYSIL 226
           A +  +D   L F+ E + +  +    V  + +  +S   + LL+   +++++ G  ++ 
Sbjct: 582 AVVPHDDGINLSFMCESKVFDLESVDSVTCNYVLSSSKNPMNLLF-TLHNSITDGKLNVH 640

Query: 227 CNLVQNGEYDLNAIMFNCAEIKLN 298
           CN +  G Y L  I+F   +  L+
Sbjct: 641 CNDIIPGRYHLKTIVFKLKDSVLS 664


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +3

Query: 462 PTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKN 611
           P +L S+  K   TE   R  N  LT L     + E  + Y  DD  NKN
Sbjct: 517 PVVLYSLQSK--DTEVRSRALNLILTFLELRNENLEFSIIYGMDDNDNKN 564


>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 110 YLKKRGVGAHIIKVASSPQLRLLYKNAYSAVSCGNYS 220
           Y    G+ A +++  S  +L L++   Y+A   GN S
Sbjct: 62  YCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVS 98


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 477 SISKKISTTETFQRLR-NKNLTTLNKIKYDSELLLHYLYDDQQNKNS 614
           S+   ++   T Q+ R NK     ++I +D  LLLH+L+++  N  S
Sbjct: 129 SLPSHVAEDRTAQQYRQNKYQLHFSRITFD--LLLHFLFENVSNGGS 173


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = +2

Query: 17  NTSNITPDIIVNAQINSEDENVLDFIIEDEYYLKKRGVGAHIIKVASSPQLR 172
           N  ++   ++    +   + NV DF+   + YL+ +G+   + +V+S+P +R
Sbjct: 60  NLISLHKSLVEIESLGGNEVNVSDFL---KSYLESKGLTVELQRVSSNPTVR 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,491
Number of Sequences: 5004
Number of extensions: 36140
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)