Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13a16
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   1.1  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   1.8  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   2.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   2.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   2.4  
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    23   3.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.8  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 5   RKMANTSNITPDIIVNAQINSEDE 76
           R  +NTSNI+  +I++ ++ S D+
Sbjct: 88  RDRSNTSNISKTVILSDKLESSDD 111


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 8   KMANTSNITPDIIVNAQINSEDENVLDFI 94
           K   T+    D I   +IN +DENVL FI
Sbjct: 35  KEIGTAQQIIDDINEGKINMDDENVLLFI 63


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 221 ILCNLVQ---NGEYDLNAIMFNCAEIKLNKGQMLFQTKIYRPDNNKT 352
           +L N +Q   N +++ + + F      +N  +++  T+   PDN++T
Sbjct: 380 VLSNKMQKMVNNDFNFDDVNFRIMNANVN--ELILNTRCENPDNDRT 424


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 155  SSPQLRLLYKNAYSAVSCGNYSI 223
            SSP   L+ ++A  A SCG  S+
Sbjct: 1257 SSPATALMLQHAPPAYSCGTVSV 1279


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 221 ILCNLVQ---NGEYDLNAIMFNCAEIKLNKGQMLFQTKIYRPDNNKT 352
           +L N +Q   N +++ + + F      +N  +++  T+   PDN++T
Sbjct: 380 VLSNKMQKMVNNDFNFDDVNFRIMNANVN--ELILNTRCENPDNDRT 424


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 221 ILCNLVQ---NGEYDLNAIMFNCAEIKLNKGQMLFQTKIYRPDNNKT 352
           +L N +Q   N +++ + + F      +N  +++  T+   PDN++T
Sbjct: 380 VLSNKMQKMVNNDFNFDDVNFRIMNANVN--ELILNTRCENPDNDRT 424


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 473 GIDFEENIDDGDVPAPKKQKLDNAEQ 550
           G   EE    GD+ +P  + LDN ++
Sbjct: 10  GSSAEEQQPSGDILSPSSEPLDNDKE 35


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 473 GIDFEENIDDGDVPAPKKQKLDNAEQ 550
           G   EE    GD+ +P  + LDN ++
Sbjct: 10  GSSAEEQQPSGDILSPSSEPLDNDKE 35


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 19  HEQHYARHHCER 54
           H+Q  AR++CER
Sbjct: 238 HQQIMARYNCER 249


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -3

Query: 594 HRTNNEATVHYRI*FCSALSSF 529
           H + N+A +HY + + S    F
Sbjct: 588 HMSINQAAIHYNLPYSSLYGRF 609


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,063
Number of Sequences: 438
Number of extensions: 2649
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)