Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13a15
(250 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 1.1
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 1.9
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 24 2.6
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 24 3.4
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 23 4.5
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 23 4.5
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 23 4.5
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 23 4.5
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 23 4.5
SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase |Schizos... 23 5.9
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 23 5.9
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 23 5.9
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch... 23 5.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 23 7.8
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 23 7.8
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 23 7.8
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 23 7.8
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 23 7.8
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 1.1
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = -3
Query: 224 NSYIVPNYSLAQQYFDLYDENGFRTRIPIQSACNNIISSVKKTNSKHKKFVYWP---KDT 54
++Y+ NYS + D Y +G I I N+I V+ + +KK + P D
Sbjct: 503 SNYLWFNYSHRSKEIDYYHMSGILMGIAIH---NSINLDVQMPRAFYKKLLQLPLSFNDL 559
Query: 53 NALVPLVWRESKEIKL 6
+ P ++R KE+ L
Sbjct: 560 DDFQPSLYRGLKELLL 575
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 24.6 bits (51), Expect = 1.9
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 10 LISLLSLHTNGTNALVSLGQ*TNFLCLELVFFTLDIMLLQAL*IGIRVRKPFSSY 174
LIS L NGTN +SL + + V+ +L M+ + L V + FS Y
Sbjct: 1350 LISFTELCKNGTNQKISL---QSLEIIREVYSSLSTMIKEGLSSKPSVNETFSKY 1401
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 24.2 bits (50), Expect = 2.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 132 ALNRYTSAKAVFVVQIEILLC 194
+LNRYTS + V +E ++C
Sbjct: 33 SLNRYTSGTVLLEVPLENIIC 53
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 23.8 bits (49), Expect = 3.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 134 SACNNIISSVKKTNSKHK 81
SA NN + +KKTN +H+
Sbjct: 869 SAFNNFMKLLKKTNDEHQ 886
Score = 22.6 bits (46), Expect = 7.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 46 WCRWCGERAKKSN 8
W R G+RA+KSN
Sbjct: 822 WARCTGQRAQKSN 834
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 23.4 bits (48), Expect = 4.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 23 SLSTPTAPTRWYL*ANKQIFCV 88
S+ PTRW AN+ I C+
Sbjct: 394 SMKVDIGPTRWIPTANRTIRCI 415
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 23.4 bits (48), Expect = 4.5
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = -3
Query: 167 ENGFRTRIPIQSACNNIISSVKKTNSKHKKFVYWPKDTNALVPLVWRESK 18
++G R + + C +++S+ K T K+ +W + L+W + K
Sbjct: 278 DSGERRKEVFEEYCKSVVSTKKITRRKNTLSDFWTLLHSLPSTLLWPQFK 327
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 23.4 bits (48), Expect = 4.5
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = -3
Query: 203 YSLAQQYFDLYDENGFRTRIPIQSACNNIISS--VKKTNSKHKKFVYWPK 60
YSL +Y+DL D F + + I+ KK N + + PK
Sbjct: 1070 YSLKDEYYDLVDPYYFHYNKNEREESDTILKKRLAKKNNVSAESIIIEPK 1119
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 23.4 bits (48), Expect = 4.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 37 NGTNALVSLGQ*TNFLCLELVFFTL 111
NGT + SL +CLE+ FF L
Sbjct: 234 NGTGWIYSLLNQNVLMCLEMPFFAL 258
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 23.4 bits (48), Expect = 4.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 149 RIPIQSACNNIISSVKKTNSKHKKFVYWPKDTNA 48
+I QS +NI+ S+K T H +Y P+ +
Sbjct: 150 QILAQSDEDNIVMSIKATKFPHFGILYHPESVGS 183
>SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 23.0 bits (47), Expect = 5.9
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = -3
Query: 215 IVPNYSLAQQYFDLYDENGFRTRIPIQSACNNIISSVKKTNSKHKKF 75
I+P Y + DL NGF I N+I ++ K +K+
Sbjct: 128 IIPLYREMLPFADLITPNGFEAEILSGMRINSIDTAFKCVECLQQKY 174
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 23.0 bits (47), Expect = 5.9
Identities = 6/20 (30%), Positives = 15/20 (75%)
Frame = -3
Query: 245 FLLYKILNSYIVPNYSLAQQ 186
F +YK+ ++VP+++ A++
Sbjct: 591 FKIYKVFEVFVVPHFASAEE 610
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 23.0 bits (47), Expect = 5.9
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Frame = -3
Query: 248 FFLLYKILNSYIVPNYSLAQQYFDLYDENGFRTRIPIQS--------ACNNIISSVKKTN 93
FFLL +VP + +YF L +R +P+ S A + +I+SV
Sbjct: 367 FFLLISTTILTLVPAPLVEFRYF-LLPFLFWRFHLPLPSGRECLMEYALHMVINSVTLYI 425
Query: 92 SKHKKFVYWPKDTNALVPLVW 30
+ F+ WP + NAL +W
Sbjct: 426 FLFRTFI-WPSEPNALQRFMW 445
>SPBC1347.09 |||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 284
Score = 23.0 bits (47), Expect = 5.9
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 197 LAQQYFDLYDENGFRTRIPIQSACNNIIS 111
++Q D+Y+E + IP + AC ++S
Sbjct: 107 VSQDMVDVYNEKFRKMNIPKERACAYVLS 135
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 22.6 bits (46), Expect = 7.8
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -3
Query: 239 LYKILNSYIVPNYSLAQQYFDLYDENGF--RTRIPIQSACNNIISSVKKTNSKHKKFVYW 66
LY +L+ YS+ + FDL+ + F ++I + + +K+ + KF+
Sbjct: 300 LYPVLSIICPTLYSVYKDIFDLFSQRSFLATSKIYRRLCLRDFYKFIKRVAFLYHKFMI- 358
Query: 65 PKD 57
P D
Sbjct: 359 PSD 361
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 22.6 bits (46), Expect = 7.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 64 LKIPTRWCRWCGERAKKSN 8
+K+P WC+ G KK+N
Sbjct: 888 VKVPVNWCKMSG--TKKTN 904
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 22.6 bits (46), Expect = 7.8
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -3
Query: 122 NIISSVKKTNSKHKKFVYW 66
N+I+ VK+ + K ++YW
Sbjct: 50 NVITQVKELDKGPKDYLYW 68
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 22.6 bits (46), Expect = 7.8
Identities = 12/56 (21%), Positives = 29/56 (51%)
Frame = +1
Query: 7 SLISLLSLHTNGTNALVSLGQ*TNFLCLELVFFTLDIMLLQAL*IGIRVRKPFSSY 174
S++ L++LHTNG++ + + + + + + D++ + IGI ++ Y
Sbjct: 194 SVMHLIALHTNGSSNPLGVTANMDRIPMNPYYLIKDLITIFIFLIGINYMAFYNPY 249
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 22.6 bits (46), Expect = 7.8
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = +3
Query: 21 ALSPHQRHQRVGIFRPINKFFVF 89
+L+ Q+ Q+ + RP+N F ++
Sbjct: 4 SLTAEQKDQKSSVKRPLNSFMLY 26
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,021,200
Number of Sequences: 5004
Number of extensions: 18305
Number of successful extensions: 60
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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