Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13a15
(250 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 22 1.3
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 22 1.3
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 19 7.1
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 19 7.1
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 19 9.3
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 19 9.3
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 19 9.3
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 19 9.3
AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier... 19 9.3
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 19 9.3
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 19 9.3
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 19 9.3
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 21.8 bits (44), Expect = 1.3
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = -3
Query: 212 VPNYSLAQQYFDLYDENGF--RTRIPIQSACNNIISSVKKTNSKHKKFVYWPKDTN 51
VP+ S+ +D+ G T + S + + SVK F WP DT+
Sbjct: 126 VPDISVYNSGDMTFDQTGIPPTTCLVFSSGSVSCVPSVKHVAKCATDFSSWPYDTH 181
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.8 bits (44), Expect = 1.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 204 LFAGTTIFRFVRRKRLSHSYTYSER 130
LFAGT F ++ + YTY R
Sbjct: 9 LFAGTVAADFQHNWQVGNEYTYLVR 33
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 19.4 bits (38), Expect = 7.1
Identities = 5/9 (55%), Positives = 8/9 (88%)
Frame = +3
Query: 18 FALSPHQRH 44
F ++PHQ+H
Sbjct: 615 FVINPHQQH 623
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 19.4 bits (38), Expect = 7.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 19 LLSLHTNGTNALVSLGQ*TNFLCLELVFFTLDIMLL 126
LLS G NAL + GQ L VF L++ L
Sbjct: 52 LLSAFLFGANALFTPGQELPARGLTAVFLGLNLGFL 87
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 19.0 bits (37), Expect = 9.3
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -3
Query: 164 NGFRTRIPIQS 132
NGFR+ +P+ S
Sbjct: 348 NGFRSTLPVVS 358
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 19.0 bits (37), Expect = 9.3
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -3
Query: 164 NGFRTRIPIQS 132
NGFR+ +P+ S
Sbjct: 317 NGFRSTLPVVS 327
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 19.0 bits (37), Expect = 9.3
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -3
Query: 164 NGFRTRIPIQS 132
NGFR+ +P+ S
Sbjct: 368 NGFRSTLPVVS 378
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 19.0 bits (37), Expect = 9.3
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -3
Query: 164 NGFRTRIPIQS 132
NGFR+ +P+ S
Sbjct: 317 NGFRSTLPVVS 327
>AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier
protein JHBP-1 protein.
Length = 253
Score = 19.0 bits (37), Expect = 9.3
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +2
Query: 209 EQYKNLKFYTTKK 247
++YKN+K Y K
Sbjct: 88 QEYKNIKLYGLTK 100
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 19.0 bits (37), Expect = 9.3
Identities = 6/29 (20%), Positives = 14/29 (48%)
Frame = -3
Query: 206 NYSLAQQYFDLYDENGFRTRIPIQSACNN 120
NY+ + Y+++ + +P+ C N
Sbjct: 317 NYNSKKLYYNIINIEQIPVPVPVPIYCGN 345
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 19.0 bits (37), Expect = 9.3
Identities = 6/29 (20%), Positives = 14/29 (48%)
Frame = -3
Query: 206 NYSLAQQYFDLYDENGFRTRIPIQSACNN 120
NY+ + Y+++ + +P+ C N
Sbjct: 328 NYNSKKLYYNIINIEQIPVPVPVPIYCGN 356
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 19.0 bits (37), Expect = 9.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 88 LELVFFTLDIMLLQAL*IGIRV 153
LE + +TLD + Q + G+R+
Sbjct: 146 LEAMLYTLDKLNTQDIVPGVRI 167
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,958
Number of Sequences: 438
Number of extensions: 1294
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used: 4401495
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
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