Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13a13
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    28   1.1  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    27   1.9  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   2.6  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   5.9  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    26   5.9  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   7.8  

>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 506 GFLDLFI-AVYNFGDRSNFVAFDTFHF-YTLIYNIC 405
           GF+ + I A+  F DRS  VAF +F +   L+Y IC
Sbjct: 120 GFIPVLIKAMKQFKDRSENVAFTSFRYALFLVYYIC 155


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = -1

Query: 619 ISRVLSIAMYLLSANLIFRVS*LSKLLRFFKSNSANS*VFWIFSSLFTISVTVRTLLHLT 440
           + R+LSIA +LLS + + R+    +    +  N+  S V   +    T SV V+  L + 
Sbjct: 14  LKRILSIAFFLLSLSTLLRIVNAQQ----YVDNNIGSMVLSDYDFAETPSVRVQRALEIL 69

Query: 439 RFIFIHLSTTF 407
           R+ +     T+
Sbjct: 70  RYYYEQEDVTY 80


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = +3

Query: 450  NKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQP 629
            N V+ +TE    D  +Q   E +EFD   +   E    ++I  +L KY A    L M   
Sbjct: 1637 NFVQKITENAEFDLALQLLAEASEFDDLAIRHNEDLINIEINKSL-KYSAACLNLPMVDA 1695

Query: 630  LLEIFRKQSRHSANCR 677
             ++ F     H A  +
Sbjct: 1696 HVKAFILTQAHMARLK 1711


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -3

Query: 692 VLNTTAAICRVSALFSKYFQQRLGHFQGAEHSHVFAERQFNFQSFIAF 549
           +L+T     ++  +FS  FQQ   +     + HVF+     ++S I +
Sbjct: 524 LLSTVFVKLKLQGIFSSSFQQVSNNMYSWIYDHVFSSSDHAYESLIYY 571


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 186 NSKHVFDHFGCSSNYCFNNYV 248
           N   VF+H  CS  Y FNN V
Sbjct: 2   NGLRVFEHVHCSVLYKFNNIV 22


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
 Frame = +3

Query: 381 SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSD-EKIQKTYELAEFDLKNLSSLESY 557
           S+  H S A  +D  +K       ++    E+  ++   IQ++      DL     L   
Sbjct: 623 SILSHNSSAGNIDDKMKSIDESTRELEKNYEVYRNEMTAIQESLSKRNQDL-----LSEM 677

Query: 558 ETLKIKLALSKYMAMLSTLEMTQPL--LEIFRKQSR 659
           E ++ +L  SKY   LST  +T     +E F+K+++
Sbjct: 678 EAIRKELENSKYQQQLSTDRLTNANNDVEAFKKEAK 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,793
Number of Sequences: 5004
Number of extensions: 44872
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)