Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13a09
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    53   2e-08
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    27   1.2  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    27   1.2  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    27   2.1  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   3.7  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    25   4.9  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   4.9  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   8.6  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    25   8.6  

>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
 Frame = +2

Query: 113 AWRKHCDIKDVENFLEDQRLEE-RLGKFETKPDSEIFIIDTGGDG--IKTEDKDIKPISL 283
           AWRK+ D++D+E+ LE  R EE + G  E KP+  +F+IDT GD    K   K IKP+ +
Sbjct: 22  AWRKNIDLEDIESGLEQTRDEEIKGGNVEHKPNDALFVIDTLGDDRIAKRSRKKIKPLKV 81

Query: 284 KKLRRSK 304
            ++  +K
Sbjct: 82  DQILENK 88


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 269 KPISLKKLRRSKLGEFPKCFEILLPDSKVQDPNTKRNTIKPVGSK 403
           K + + K R  K+ E  K  + LL   ++ DP TK++ IK + S+
Sbjct: 127 KAVEMIKRRDKKVKELEKIQKELLVVYELPDPETKKSKIKALQSQ 171


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +2

Query: 212 EIFIIDTGGDGIKTEDKDIKPISLKKLRRSKLGEF---PKCFEIL-LPDSKVQDPNTKRN 379
           E+F+++  GD I+TE+       LKK   +  G F    K +E L LP +++ +    RN
Sbjct: 61  ELFVVEDQGDKIETEETGTCAQQLKKRGWNIAGHFMFSHKIWEDLSLPQNELLESGPNRN 120

Query: 380 TI 385
            +
Sbjct: 121 LL 122


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 445 LIXSFISQLTEGRWLGTYWFYGISFCIW 362
           ++ S++S +  G +  ++W+Y   FC W
Sbjct: 117 IVTSWLSDIRRG-YCTSHWYYNEKFCCW 143


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 160 FQEIFNVFNITVFPPRFFILFRYMFLFL 77
           F E++N+ NI    P F +    MFL L
Sbjct: 6   FYELYNIKNIRPLIPSFHVCLLIMFLIL 33


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 365 NTKRNTIKPVGSKPTAFSKLTDKRXYEKGIYQKKIXDARRNRKM 496
           N +R+ ++ + SKP   S L+     +KG Y++    A+RN+ +
Sbjct: 44  NQERSDLEHIHSKPKKDSLLSWNILLKKGSYKENELLAKRNQNL 87


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 122 KHCDIKDVENFLEDQRLEERLGKFETKPDSEIFIIDTGGDGIKTEDKDIKPIS 280
           KH  I +  N    + LE    +F  K   EI +ID     IK +DK I  ++
Sbjct: 543 KHIQILENTNQSLKKNLENGRAEFRLK---EIALIDLANQQIKNQDKTIHDLN 592


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 221 IIDTGGDGIKTEDKDIKPISLKKLRRSKLGEFPKCFEILLP 343
           IIDT  + +    + +KP  L++++   L  FP   E+++P
Sbjct: 751 IIDT--EKVTELHQILKPFFLRRVKSEVLDNFPTKVEVIIP 789


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = +2

Query: 233 GGDGIKTEDKDIKPISLKKLRRSKLGEFPKCFEILLPDSKVQDPNTKRNTIK 388
           G +  +     + P  +KK RR + G F +  + L PD+     +  R  ++
Sbjct: 607 GTEDTRKHVSSLMPQVVKKRRRLEDGSFEEYLDYLFPDTATDQGDKMRKMLE 658


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,686,939
Number of Sequences: 5004
Number of extensions: 30564
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)