Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13a09
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,322...    31   0.53 
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28...    29   2.1  
08_02_1014 - 23586552-23587224,23587402-23587463,23587735-235879...    28   3.7  
05_01_0317 - 2481308-2481350,2481611-2481687,2481765-2481831,248...    28   5.0  
06_03_0675 - 23428948-23431389                                         27   8.7  
06_01_0459 + 3272479-3272817,3272927-3272992,3273104-3273169,327...    27   8.7  
02_01_0110 + 819022-819264,819996-820761,820846-820920,821276-82...    27   8.7  

>05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,
            32233-33714
          Length = 1189

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 268  NVFIFSFDTISSRVYDEDLTVRFCFKF 188
            NVF  S   I+  V+D+D++ RFC ++
Sbjct: 946  NVFFTSLPVIAMGVFDQDVSARFCLRY 972


>02_01_0041 +
           279583-281622,281724-282047,282315-282443,282526-282648,
           282768-282923,283224-283349,283426-283560,283815-283942,
           284037-284148,284233-284547,284655-284771,284871-285166,
           285252-285783,287980-288082,288808-288881,288965-289062,
           289340-289380,289977-290032,290170-290244,290377-290469,
           290602-290850,290930-291002,291681-291766,291853-291938,
           292067-292142,292280-292347,292430-292496,292570-292665,
           292741-292843,293214-293309,293396-293466
          Length = 2047

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = -1

Query: 167 ADLPGNFQRL*YHSVSATLFYSFSIHVSFS*SPSCSTN-NNISVSKTSTR 21
           A LP +FQ L  H++S +   S +  VSF+ + + +++  N+++  +ST+
Sbjct: 372 ASLPDSFQSLGQHAISESFNSSTNSQVSFNTAETATSHYGNVNLDSSSTQ 421


>08_02_1014 -
           23586552-23587224,23587402-23587463,23587735-23587950,
           23588125-23588209,23589232-23589389,23589505-23589625,
           23590081-23590243,23590330-23590415,23590660-23590742,
           23590816-23591677,23593266-23593693
          Length = 978

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 218 FIIDTGGDGIKTEDKDIKPISLKKL 292
           ++ DT G   KT+D  +KP+SL+ +
Sbjct: 719 YVKDTHGKWYKTDDSQVKPVSLENV 743


>05_01_0317 -
           2481308-2481350,2481611-2481687,2481765-2481831,
           2482756-2482878,2482968-2483087,2483557-2483642,
           2483960-2484070,2484194-2484274,2484475-2484546,
           2484631-2484809,2485257-2485485
          Length = 395

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
 Frame = +2

Query: 113 AWRKHCDIKDVENFLEDQRLEERLG--KFETKPDSEIFIIDTGGDGIKT 253
           AWR +    D+E+F E Q  +   G     + P   +F +D       T
Sbjct: 14  AWRANISTDDIEDFFEKQTRDAHAGAAAIPSLPSDSLFFVDKPASAAST 62


>06_03_0675 - 23428948-23431389
          Length = 813

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 116 WRKHCDIKDVENFLEDQRLEERLGKF 193
           W  HCD+K  EN L D  LE ++  F
Sbjct: 638 WVIHCDVKP-ENILLDDNLEPKITDF 662


>06_01_0459 +
           3272479-3272817,3272927-3272992,3273104-3273169,
           3274220-3274537,3274595-3274701,3274816-3274867
          Length = 315

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 197 TKPDSEIFIIDTGGDGIK-TEDKDIKPISLKKLRRSKLGEFPKCFEILLPDSKVQD 361
           ++P++       GG G K +   ++  +S K+ RRSK+ E  K  + L+P+S   D
Sbjct: 83  SEPEAAAGARPRGGSGSKRSRAAEVHNLSEKR-RRSKINEKMKALQSLIPNSNKTD 137


>02_01_0110 +
           819022-819264,819996-820761,820846-820920,821276-821445,
           821644-821742,821835-822134,822211-822318,822443-822514,
           822580-822666,822887-822958,823063-823152,823795-823902,
           824015-824083,824177-824242,824395-824418
          Length = 782

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +2

Query: 260 KDIKPISLKKLRRSKLGEFPKCFEILLP-DSKVQDPNTKRNTIKPVGSKPTAFSKLTDKR 436
           +D  P++L++   SK  +       L P  SK ++ NT    ++P+GS+P    K     
Sbjct: 169 QDDPPLTLQRPAGSKPKQDGPSLAPLRPVGSKPKENNTSLTLVRPMGSRPIVRGKPVQDS 228

Query: 437 XYEKG 451
              KG
Sbjct: 229 WPSKG 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,269,110
Number of Sequences: 37544
Number of extensions: 168724
Number of successful extensions: 409
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)