Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13a09
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U53148-2|AAB37078.1|  360|Caenorhabditis elegans Hypothetical pr...    28   3.4  

>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
           protein B0496.3a protein.
          Length = 1551

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 341 PDSKVQDPNTKRNTIKPVGSKPTAFSKLTDK 433
           P+ + +DP T R T KP  S+  +F  + D+
Sbjct: 490 PEQQPEDPKTARGTSKPADSRAPSFVPVKDR 520


>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
           protein B0496.3b protein.
          Length = 1592

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 341 PDSKVQDPNTKRNTIKPVGSKPTAFSKLTDK 433
           P+ + +DP T R T KP  S+  +F  + D+
Sbjct: 490 PEQQPEDPKTARGTSKPADSRAPSFVPVKDR 520


>U53148-2|AAB37078.1|  360|Caenorhabditis elegans Hypothetical
           protein C26F1.6 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 407 LAWNLLVLWYFVLYLDLAPLNRVVK 333
           +A+NL+ +W + +  D+AP NR ++
Sbjct: 137 VAYNLIRIWEYTINFDVAPENRTIE 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,227,792
Number of Sequences: 27780
Number of extensions: 164493
Number of successful extensions: 507
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)