Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13a05
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    24   1.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.0  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +2

Query: 146 KINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDS-EKIPYLIGEIFICQNLE 322
           +++K   L  ++     +L   Q D+ N  + ++ +   + +   I  LI    I  N++
Sbjct: 40  QVDKMKTLVEELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATI--NID 97

Query: 323 ITLKNLEEAKAKKIHEIHDLEEKC 394
           +TL+N E    KKI +I+ L   C
Sbjct: 98  VTLQNDEVLDWKKIFDINLLGLTC 121


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 257 LADDSEKIPYLIGEIFICQNLEITLKNLEEAKAKKIHEIHDLEEKC 394
           ++ D+    YL+  +F   +      NLE  + ++  E  DLEE C
Sbjct: 227 MSQDNHSKEYLVSIMFSHYDRNNN-GNLEREELEQFAENEDLEELC 271


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 310 TNKNFTNKVRDFF 272
           TN N TNK +D++
Sbjct: 137 TNNNNTNKYKDYY 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,053
Number of Sequences: 438
Number of extensions: 2750
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)