Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13a02
(688 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15686| Best HMM Match : DUF1168 (HMM E-Value=0.87) 31 0.66
SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081) 31 0.87
SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06) 30 1.5
SB_58341| Best HMM Match : Ribosomal_60s (HMM E-Value=8.4) 29 2.7
SB_2860| Best HMM Match : IncA (HMM E-Value=0.41) 29 3.5
SB_13095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_39140| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_30240| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_32811| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_15686| Best HMM Match : DUF1168 (HMM E-Value=0.87)
Length = 488
Score = 31.5 bits (68), Expect = 0.66
Identities = 21/95 (22%), Positives = 41/95 (43%)
Frame = +3
Query: 228 ELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSI 407
E++N +S I+ E Q+ N+ + + S +TRI + L F + ++
Sbjct: 80 EIDNQRSDIDAMEEQIDRLTNINESLRRNLSAKQTRIRMLAKEKAELQAEFKAFKLDLG- 138
Query: 408 SSNEVLDNIDLEYDDGVDFDVYDEYEPSSHWSNMT 512
+NI L + + D++D YE + +T
Sbjct: 139 -----KENIGLSESEELTGDIHDSYEQEDDGNELT 168
>SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081)
Length = 1617
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +3
Query: 390 SVEDSISSNEVLDNIDLEYDDGVDFDVYDEYEPSSHWSNMTVSDAKALLQNPPKD 554
S D SSNE L N+D +G+D + + P N++V + L +PPK+
Sbjct: 966 SQSDDSSSNEQLPNLDNTASNGIDASAFVKDSP----ENVSVIERDTLSVSPPKN 1016
>SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/45 (24%), Positives = 32/45 (71%)
Frame = +3
Query: 219 VLQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQ 353
V QEL N ++ I + ++ TC+ + ++++N+ ++ K++++++L+
Sbjct: 770 VSQELKNAQAHIAQKQKELQTCERISELEENK-ADTKSKMDERLK 813
>SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06)
Length = 776
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +3
Query: 255 ELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTP---LNKNFITYSVEDSISSNEVL 425
++Y+ + C+ + K N N T ++L+ L L N I SVEDS+ S++++
Sbjct: 538 QVYKGEFCHCEFDKIFKSNTCKNTSTIHTRRLRSLGKNINLELNRIKRSVEDSVYSDDII 597
Query: 426 DN 431
D+
Sbjct: 598 DH 599
>SB_58341| Best HMM Match : Ribosomal_60s (HMM E-Value=8.4)
Length = 153
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 426 DNIDLEYDDGVDFDVYDEYE-PSSHWSNMTVSDAKALLQ 539
D +D +YDD ++D YDEY+ W + KA+ +
Sbjct: 87 DVLDDDYDDYDEYDEYDEYDRVRVEWDSFESDSVKAITE 125
>SB_2860| Best HMM Match : IncA (HMM E-Value=0.41)
Length = 417
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/78 (24%), Positives = 36/78 (46%)
Frame = +3
Query: 186 FVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTP 365
F+ V+K L+ N KSKI + + V +IKQ + + R++KQ Q L
Sbjct: 240 FLRVEKAELERKLESSN--KSKIHYKQQWGRALREVAKIKQQEQTVARARLKKQEQELEH 297
Query: 366 LNKNFITYSVEDSISSNE 419
+ ++ ++ + + E
Sbjct: 298 MRLRYLAAEEKEVVKATE 315
>SB_13095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +3
Query: 216 SVLQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSV 395
+++Q++ +I++K + Q STC V +K S + +FL P+ I +V
Sbjct: 250 TIVQQVIDIQNKAQEQSQQQSTCSLVEDLKNTMVSKNELECGIPAEFLDPI--TCILMTV 307
Query: 396 EDSISSNEVLDNIDLE 443
+ S E +D+ L+
Sbjct: 308 PILLPSGENVDSSTLD 323
>SB_39140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +3
Query: 432 IDLEYDDGVDFDVYDEYEPSSHWSNMTVSDAKALLQNPPKDRVMFLDTVTTNN 590
++++ ++YD Y P+ + N T + + + N F+ +TTNN
Sbjct: 312 MEIQTSSNQQINLYDSYNPNFNTCNTTTNPNQNHINNIANSYGNFMQQMTTNN 364
>SB_30240| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 441 EYDDGVDFDVYDEYEPSSHWSNMTVSD 521
+YDD D+D YD+Y+P + + D
Sbjct: 324 DYDDYDDYDDYDDYDPDDIYDDYEAYD 350
>SB_32811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 315 SSNIKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNI 434
S+NIKT K + LNK + Y E + VLDNI
Sbjct: 315 SNNIKTLATKTNAKVQHLNKEVLNYLKEGFLVDEYVLDNI 354
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,610,587
Number of Sequences: 59808
Number of extensions: 384055
Number of successful extensions: 1183
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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