Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13a02
         (688 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U48436-1|AAC82513.1| 1311|Homo sapiens fragile X mental retardat...    30   6.7  
L76569-1|AAA99416.1| 1276|Homo sapiens fragile X E mental retard...    30   6.7  
AJ001550-1|CAA04822.1| 1272|Homo sapiens FMR2 protein protein.         30   6.7  
AF012624-1|AAB71534.1| 1311|Homo sapiens familial mental retarda...    30   6.7  
AB102644-1|BAC81113.1| 1272|Homo sapiens FMR2 protein.                 30   6.7  
BC132683-1|AAI32684.1| 1301|Homo sapiens AFF2 protein protein.         30   8.9  
AB126073-1|BAD20200.1|  288|Homo sapiens keratin associated prot...    30   8.9  

>U48436-1|AAC82513.1| 1311|Homo sapiens fragile X mental retardation
            protein FMR2p protein.
          Length = 1311

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 3    SQYQTFIMDGVKL-LGTCALIILLSTTNTVVGRDRITFTPIEDSAGLVFERMYGLRHHTD 179
            S   T +MD   L + + A + LLS+++T V R ++TF     +A    +    L+H  D
Sbjct: 1028 STITTGLMDSSHLEMTSWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKAD 1087

Query: 180  ERF-VFVKKFNFA 215
              F  F K  N+A
Sbjct: 1088 ALFEKFGKAVNYA 1100


>L76569-1|AAA99416.1| 1276|Homo sapiens fragile X E mental retardation
            syndrome protein protein.
          Length = 1276

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 3    SQYQTFIMDGVKL-LGTCALIILLSTTNTVVGRDRITFTPIEDSAGLVFERMYGLRHHTD 179
            S   T +MD   L + + A + LLS+++T V R ++TF     +A    +    L+H  D
Sbjct: 993  STITTGLMDSSHLEMTSWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKAD 1052

Query: 180  ERF-VFVKKFNFA 215
              F  F K  N+A
Sbjct: 1053 ALFEKFGKAVNYA 1065


>AJ001550-1|CAA04822.1| 1272|Homo sapiens FMR2 protein protein.
          Length = 1272

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 3    SQYQTFIMDGVKL-LGTCALIILLSTTNTVVGRDRITFTPIEDSAGLVFERMYGLRHHTD 179
            S   T +MD   L + + A + LLS+++T V R ++TF     +A    +    L+H  D
Sbjct: 989  STITTGLMDSSHLEMTSWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKAD 1048

Query: 180  ERF-VFVKKFNFA 215
              F  F K  N+A
Sbjct: 1049 ALFEKFGKAVNYA 1061


>AF012624-1|AAB71534.1| 1311|Homo sapiens familial mental retardation
            protein 2 protein.
          Length = 1311

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 3    SQYQTFIMDGVKL-LGTCALIILLSTTNTVVGRDRITFTPIEDSAGLVFERMYGLRHHTD 179
            S   T +MD   L + + A + LLS+++T V R ++TF     +A    +    L+H  D
Sbjct: 1028 STITTGLMDSSHLEMTSWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKAD 1087

Query: 180  ERF-VFVKKFNFA 215
              F  F K  N+A
Sbjct: 1088 ALFEKFGKAVNYA 1100


>AB102644-1|BAC81113.1| 1272|Homo sapiens FMR2 protein.
          Length = 1272

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 3    SQYQTFIMDGVKL-LGTCALIILLSTTNTVVGRDRITFTPIEDSAGLVFERMYGLRHHTD 179
            S   T +MD   L + + A + LLS+++T V R ++TF     +A    +    L+H  D
Sbjct: 989  STITTGLMDSSHLEMTSWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKAD 1048

Query: 180  ERF-VFVKKFNFA 215
              F  F K  N+A
Sbjct: 1049 ALFEKFGKAVNYA 1061


>BC132683-1|AAI32684.1| 1301|Homo sapiens AFF2 protein protein.
          Length = 1301

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 3    SQYQTFIMDGVKL-LGTCALIILLSTTNTVVGRDRITFTPIEDSAGLVFERMYGLRHHTD 179
            S   T +MD   L + + A + LLS+++T V R ++TF     +A    +    L+H  D
Sbjct: 1018 STITTGLMDSSHLEMMSWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKAD 1077

Query: 180  ERF-VFVKKFNFA 215
              F  F K  N+A
Sbjct: 1078 ALFEKFGKAVNYA 1090


>AB126073-1|BAD20200.1|  288|Homo sapiens keratin associated protein
           protein.
          Length = 288

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 21/83 (25%), Positives = 24/83 (28%)
 Frame = -2

Query: 636 GCSQCSLCILRICCSRCWW*PCPKTLLGLWAGFGAKLSRRIQSCCSNARTVXXXXXXXXX 457
           GCSQCS C    C S C    C  +            S   QS C               
Sbjct: 195 GCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSSSGCGSSCCQSSCCKPYCCQSSCCKPCC 254

Query: 456 XXXXIPNRCCPALRCLKCCLPQS 388
                 + CC +  C  CC   S
Sbjct: 255 SSSGCGSSCCQSSCCNPCCSQSS 277


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,420,415
Number of Sequences: 237096
Number of extensions: 1617263
Number of successful extensions: 3983
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3975
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)