Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12p24
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    29   0.35 
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   1.9  
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    26   3.3  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   4.4  

>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 245 DNYSLHNFYNNNRKPLKPTTLHDGNIK-KSVYENI 346
           DNYSL  F N N  P KP+  H   +K ++++E++
Sbjct: 112 DNYSLVIFSNQNGIPRKPSAGHTFQMKIRAIFESL 146


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -1

Query: 248 YP*CSTGNITDAYVLIFYCIQLLYDLINVHNNTFIDTHI*F 126
           YP   + NI DAYV+I   +++++ ++ +  +  +D  + F
Sbjct: 696 YPLGHSNNINDAYVVIHTLLKVIFSVVPLPFDVPVDNSVDF 736


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 224 YCLCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIKKSVYENITYVRKLMCKENMP 385
           +CL CT+    L  FY    K +K T +      K+  + I +  K    ENMP
Sbjct: 116 WCLVCTLALIFLTYFYETWTKAVKVTVIFLAQCVKACGKGIKHFLKKW--ENMP 167


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 260 HNFYNNNRKPLKPTTLHDGNIKKSVYENITYVRKLMCKENMPGEHDHKFYNR 415
           HN Y++  KP+    L      KS Y +++  R L  K++  G  D KF+ +
Sbjct: 326 HNIYSSFIKPIDDRRLEFDEQSKSFYGSLS--RYLSAKKDKKG-GDSKFFQK 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,676,354
Number of Sequences: 5004
Number of extensions: 32928
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)