Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12p24
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0418 + 21096532-21096627,21096749-21096963,21097062-21097371     28   3.3  
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    28   4.3  

>05_04_0418 + 21096532-21096627,21096749-21096963,21097062-21097371
          Length = 206

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 311 RVTLSA*EVCGCCCKNCATNNYP*CSTGNI 222
           +VT+SA   CGCCC N      P   T  +
Sbjct: 65  QVTVSAIGGCGCCCGNGKPRGIPSSKTNRV 94


>07_03_1530 +
           27502546-27502671,27503487-27503561,27504670-27504746,
           27505576-27507522,27508478-27508946,27509898-27510079,
           27510746-27511208,27511295-27511691,27511810-27511937,
           27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 272 NNNRKPLKPTTLHDGNIKKSVYENITYVRKLMCKEN-MPGEHDHKF 406
           N+N++  +PT+  D N+ KS   NI  V    C  N  P E    F
Sbjct: 178 NDNKQDSRPTSSMDHNVTKSPGSNIPAVESGRCVVNSAPDEPSSSF 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,452,264
Number of Sequences: 37544
Number of extensions: 165143
Number of successful extensions: 276
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)