Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12p24
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z47075-3|CAA87383.2|  182|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U58727-4|AAB00584.2|  148|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U21324-13|AAA62558.1|  357|Caenorhabditis elegans Hypothetical p...    27   5.1  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    24   6.3  
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    24   6.4  
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    24   6.4  
U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    24   6.5  
Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    24   6.5  
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U64846-9|AAG24117.3|  343|Caenorhabditis elegans Serpentine rece...    27   8.9  
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF098996-2|AAC68711.3|  431|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical
           protein B0462.1 protein.
          Length = 548

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 152 CYYVRLLNHIITEYNKKLKHMHQ*YC 229
           C    +LN+   EYNK++  +H  YC
Sbjct: 305 CKEAEVLNNAFDEYNKRMDELHNEYC 330


>Z47075-3|CAA87383.2|  182|Caenorhabditis elegans Hypothetical
           protein E02H1.6 protein.
          Length = 182

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 349 CDIFVNRFFNVTIV*RCRLER 287
           CD+F  R+F+V +V RC  E+
Sbjct: 89  CDLFPERWFDVVVVLRCPTEK 109


>Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical
           protein C08F8.2b protein.
          Length = 719

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 118 RFSKLNSLYEYNSTCKTQSKDDVIFVRYYKHV 23
           RF  +NS  + NS  KT + +D++  R  KHV
Sbjct: 28  RFPAMNSRRKRNSVRKTATIEDIVEPRKVKHV 59


>Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical
           protein C08F8.2a protein.
          Length = 721

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 118 RFSKLNSLYEYNSTCKTQSKDDVIFVRYYKHV 23
           RF  +NS  + NS  KT + +D++  R  KHV
Sbjct: 30  RFPAMNSRRKRNSVRKTATIEDIVEPRKVKHV 61


>U58727-4|AAB00584.2|  148|Caenorhabditis elegans Hypothetical
           protein D1005.5 protein.
          Length = 148

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
 Frame = +2

Query: 149 TCYYVRLLNHIITEYNKKLKHMHQ*YC-LCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIK 325
           TCY  +  + ++   N K+  +HQ     C + +N SL  ++ +  + L+   +   +IK
Sbjct: 58  TCYQRKKRSRVVIVLNLKIPKVHQNRVKKCVSFNNGSL--YHVSETESLRTLRV---DIK 112

Query: 326 KSVYENITY-----VRKLMCKE 376
           K  +EN+T+     VR++ C +
Sbjct: 113 KCFFENLTFCPHAAVREINCTD 134


>U21324-13|AAA62558.1|  357|Caenorhabditis elegans Hypothetical
           protein C35D10.2 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 124 IIRFSKLNSLYEYNSTCKTQSKDDVIFV 41
           I +++ +  LY+  + C T SKDD+IF+
Sbjct: 78  IDKWNNMEELYQSIADCFTISKDDIIFL 105


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 23.8 bits (49), Expect(2) = 6.3
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 284 CGCCCKNCAT 255
           C CCC+ C T
Sbjct: 93  CCCCCRRCCT 102



 Score = 21.8 bits (44), Expect(2) = 6.3
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -1

Query: 278 CCCKNCATNNYP*C 237
           CCC  C T   P C
Sbjct: 107 CCCTRCCTCCRPCC 120


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 23.8 bits (49), Expect(2) = 6.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 284 CGCCCKNCAT 255
           C CCC+ C T
Sbjct: 93  CCCCCRRCCT 102



 Score = 21.8 bits (44), Expect(2) = 6.4
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -1

Query: 278 CCCKNCATNNYP*C 237
           CCC  C T   P C
Sbjct: 107 CCCTRCCTCCRPCC 120


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 23.8 bits (49), Expect(2) = 6.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 284 CGCCCKNCAT 255
           C CCC+ C T
Sbjct: 92  CCCCCRRCCT 101



 Score = 21.8 bits (44), Expect(2) = 6.4
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -1

Query: 278 CCCKNCATNNYP*C 237
           CCC  C T   P C
Sbjct: 106 CCCTRCCTCCRPCC 119


>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 23.8 bits (49), Expect(2) = 6.5
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 284 CGCCCKNCAT 255
           C CCC+ C T
Sbjct: 92  CCCCCRRCCT 101



 Score = 21.8 bits (44), Expect(2) = 6.5
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -1

Query: 278 CCCKNCATNNYP*C 237
           CCC  C T   P C
Sbjct: 106 CCCTRCCTCCRPCC 119


>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 23.8 bits (49), Expect(2) = 6.5
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 284 CGCCCKNCAT 255
           C CCC+ C T
Sbjct: 91  CCCCCRRCCT 100



 Score = 21.8 bits (44), Expect(2) = 6.5
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -1

Query: 278 CCCKNCATNNYP*C 237
           CCC  C T   P C
Sbjct: 105 CCCTRCCTCCRPCC 118


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 290 EVCGCCCK-NCATNNYP*CSTGNITDAYVLIFYCIQ 186
           + CG  C  +CAT N P C+   +T  +  I + ++
Sbjct: 365 QTCGSACPISCATRNQPRCNERCVTGCFCKIPFILE 400


>Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical
           protein T01D3.3a protein.
          Length = 802

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 290 EVCGCCCK-NCATNNYP*CSTGNITDAYVLIFYCIQ 186
           + CG  C  +CAT N P C+   +T  +  I + ++
Sbjct: 156 QTCGSACPISCATRNQPRCNERCVTGCFCKIPFILE 191


>U64846-9|AAG24117.3|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein193 protein.
          Length = 343

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 373 FAHQLANICDIFVNRFFNV 317
           FA+ + +I  IF NRFFN+
Sbjct: 108 FAYMVISIVSIFENRFFNI 126


>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical
           protein R03G5.3 protein.
          Length = 1311

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 151 RLSILTFDFIIRFSKLNSLYEYNSTCKTQ 65
           +L +L FDF     ++NS Y +   C+TQ
Sbjct: 655 KLVLLVFDFNTNTFQINSNYNFTWFCRTQ 683


>AF098996-2|AAC68711.3|  431|Caenorhabditis elegans Hypothetical
           protein T11F1.6 protein.
          Length = 431

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +2

Query: 206 KHMHQ*YCLCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIKKSVYENITYVRKL 364
           K++H  YCL     + SL  F+N +  P K T ++ GN++ +  +   YV KL
Sbjct: 323 KNIHANYCLDGVSFSESLCQFFNMSSLPEKCTYIY-GNVEINAGDE-EYVYKL 373


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,333,072
Number of Sequences: 27780
Number of extensions: 187723
Number of successful extensions: 474
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)