Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12p22
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    27   0.22 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.1  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   8.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.1  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 220 TSEEDKRLQEEL-NMLVDKLLGNEVDLYFPALQMLSNLIRT 339
           T   D RL+  + N+    + G+ VD+YF     LSN+ RT
Sbjct: 672 TGINDARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRT 712


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 259 YSIPPVGVCLPRTLQSWHSFSLGRKKSAN 173
           + I   G C+   + SW SF L R+ +A+
Sbjct: 216 FLIQVYGPCVLLVVLSWVSFWLNREATAD 244


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 672 VKCDNISYEWQQ*IHVFYIPFF 607
           V C N  Y+    +  FYIP F
Sbjct: 195 VVCQNFFYQIYATLGSFYIPLF 216


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +1

Query: 403 LKQVYEKITDEKTKKF-C--ADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGH 573
           LK +YE  ++E+ KKF C  A V   L      TL V EK E     L  T  +  +  H
Sbjct: 37  LKSMYEANSEEQMKKFGCFEACVFQKLHFMDGNTLNV-EKLESGTREL--TPDDFTEDVH 93

Query: 574 EYVRQLEGEIAEE 612
           E + Q   + A+E
Sbjct: 94  EIIEQCVSKAADE 106


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 415 YEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLS 552
           +EK   E+ KK   D +   A   S + E+   +  +  C L  LS
Sbjct: 241 HEKALREQAKKMNVDSLRSNANTSSQSAEIRIAKAAITICFLYVLS 286


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 547 LSNVGDWGHEYVRQLE 594
           + N G W  EY R+LE
Sbjct: 288 VKNSGQWLREYDRELE 303


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 391  HYPALKQVYEKITDEKT 441
            HYP L  +Y   TD+K+
Sbjct: 1469 HYPDLHNLYAVPTDKKS 1485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,479
Number of Sequences: 438
Number of extensions: 4506
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)