Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12p13
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    31   0.15 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    30   0.36 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   1.1  
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    26   5.8  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   5.8  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   7.7  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    26   7.7  

>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = +2

Query: 173 SNSTNSVAIAPYNKSKEPTLDAGESIWY------NKCVDFVQKIIRYYRCNDMSELSPLM 334
           +N    + I      K+  + AGE++ Y      N+C+ F+ +  R ++C D +E   L+
Sbjct: 476 NNDDPQIQIEILRSLKDTFIKAGENVKYLLPVVVNRCI-FLARNFRIFKCMDWAEKVRLL 534

Query: 335 IHFINT 352
             F+NT
Sbjct: 535 WEFVNT 540


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +2

Query: 20  ERGNFYYNTPPPPLRY--PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSV 193
           +RGN +  +PPPPL Y  P   AT    NA   NNA      TT  N  +   ++ ++ +
Sbjct: 55  QRGNEFQASPPPPLGYVTPEYGATGTPVNA---NNASRVDYATTAANVPEEYANDYSSEL 111

Query: 194 AIAPYNKSKEPTLD 235
           A   +N +  P +D
Sbjct: 112 AYI-HNVNDMPHVD 124


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +1

Query: 634  HGGGIGDVQHSHSVTVQSAAGQQLHD--SVAQARHSAAKHTERSRVASXFRTS 786
            H   I D +   +VT+ S++GQ  H   S     H+   H   +  +S F TS
Sbjct: 3688 HSSSISDTKSPATVTISSSSGQFTHSTFSTGSTMHNTVSHA--TSTSSSFTTS 3738


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 554 FYNGGADMLGKDALAEAAKQLSLA 625
           FY    ++ GK  LAEAAKQ+ ++
Sbjct: 49  FYIPSFNLFGKGCLAEAAKQIKMS 72


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 53  PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVA 196
           PP+  P+  +    TN+   ++A G+ PP     K++  RS+S N  A
Sbjct: 536 PPIVKPNLMSEPTPTNSDEKSHALGFPPPP--GQKIEFQRSSSKNGTA 581


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
 Frame = +2

Query: 320 LSPLMIHFINTIR-DMCIDTNPINV-----NVVKRFESEETMIRHLIRLQKELGQGNAAE 481
           L+ ++ +F+  +  D  ++TNP  V     NV K FE  ET         K L  GN   
Sbjct: 3   LTSVLWNFVAKLAVDHGLNTNPDQVFQTVENVGKSFEKYETSFL------KSLFNGNLGL 56

Query: 482 SLPSDSNIFQASFVL 526
           SLPS  NI     VL
Sbjct: 57  SLPSAINILTLIIVL 71


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 424 HDTPPDSVAKRVGTRQRGRVPAERFEYI 507
           +D+ PD++ +RV  +QR   P + F+ I
Sbjct: 160 NDSVPDTIDERVLNKQRNNKPLDNFKCI 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,683
Number of Sequences: 5004
Number of extensions: 68971
Number of successful extensions: 256
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)