Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12p09
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0550 - 4099485-4099659,4100295-4100728,4101783-4102187          101   6e-22
04_03_0280 + 13854758-13855585                                         93   3e-19
02_01_0724 - 5415218-5415280,5415398-5415523,5415614-5415710,541...    32   0.55 
01_01_0988 - 7806113-7806193,7806275-7806499,7806589-7806709,780...    31   0.97 
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    29   3.9  
08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754           28   9.0  

>07_01_0550 - 4099485-4099659,4100295-4100728,4101783-4102187
          Length = 337

 Score =  101 bits (242), Expect = 6e-22
 Identities = 66/184 (35%), Positives = 99/184 (53%), Gaps = 5/184 (2%)
 Frame = +2

Query: 164 SGSTVVYAVQRLAERVESEKLK-VTCIPTSFQAKQLIIKHGLNLGELETNPNIDVTIDGA 340
           +GST  +AV  +   + S KL  +  +PTS +  +     G+ L  L+ +P ID+ IDGA
Sbjct: 74  TGSTAAFAVAEIGALLASGKLSGIVGVPTSKRTFEQAQSLGIPLSTLDDHPRIDLAIDGA 133

Query: 341 DEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMAY 520
           DEVD ++ L+KG GG LL+EK++ + S K IV+ D TK    LG      +P+EV+   +
Sbjct: 134 DEVDPDLNLVKGRGGALLREKMVEAASDKFIVVVDETKLVTGLGGS-GLAMPVEVVQFCW 192

Query: 521 VPIKNKIISLY---GGEIKLRSAVAKAG-PVVTDNGNFILDWMFANQNLDWEKVNNTIKL 688
              + ++  L+   G E KLR  + + G P VTDN N+I+D  F     D       I  
Sbjct: 193 KYNQVRLQDLFNDEGCEAKLR--LDEGGKPYVTDNSNYIVDLYFKTPIKDALAAGKEISA 250

Query: 689 IPGV 700
           + GV
Sbjct: 251 LEGV 254


>04_03_0280 + 13854758-13855585
          Length = 275

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 64/190 (33%), Positives = 103/190 (54%), Gaps = 11/190 (5%)
 Frame = +2

Query: 164 SGSTVVYAVQRLAERVESEKLK-VTCIPTSFQAKQLIIKHGLNLGELETNPNIDVTIDGA 340
           +GST  +A+ RL + + S +L  V  +PTS + +    + G+ +  L     ID++IDGA
Sbjct: 59  TGSTAAHALDRLGDLLRSGELAAVAGVPTSLKTEAHAARVGIPMLPLGEAGGIDLSIDGA 118

Query: 341 DEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMA- 517
           DEVD  + L+KG GG LL+EK+I     + +VI D +K   +LG      VP+EV+P   
Sbjct: 119 DEVDPELNLVKGRGGSLLREKMIEGSGGRFVVIVDESKLVPRLG--CTGAVPVEVVPFGC 176

Query: 518 --YVPIKNKII-SLYGGEIKLRSAVAKAGP-----VVTDNGNFILDWMFANQ-NLDWEKV 670
              + +  K+   L G   +LR+  +K G       VTDNGN+I++  F +    D  ++
Sbjct: 177 DHTLGLVRKVFDGLPGFSARLRTVASKDGEGKEEMFVTDNGNYIVEMFFEDGIRGDLNEI 236

Query: 671 NNTIKLIPGV 700
           ++ +  I GV
Sbjct: 237 SDRLLRITGV 246


>02_01_0724 -
           5415218-5415280,5415398-5415523,5415614-5415710,
           5415797-5415861,5415964-5416026,5416127-5416197,
           5416430-5416489,5416564-5416663,5416863-5416938,
           5417284-5417358,5417451-5417575,5417664-5417722,
           5418031-5418109,5418303-5418533
          Length = 429

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 633 GCLXTKTWIGRKSITQ*N*SLEFVETG--LFVNMCCK 737
           GCL   TW G+K I+  N + +F+E G  + +  CCK
Sbjct: 373 GCLLELTWNGQKEISVGNSTRKFLEDGDEVILTACCK 409


>01_01_0988 -
           7806113-7806193,7806275-7806499,7806589-7806709,
           7807065-7807256,7807884-7807947,7808135-7808261,
           7808338-7808411,7808494-7808598,7808763-7808865,
           7808966-7809028,7809113-7809296,7809788-7809858
          Length = 469

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
 Frame = +2

Query: 401 KIIASCSKKLIVIADYTKDSV-KLGDRYKKGVPIEVIPMAYVPIKNKIISLYGGEIKLRS 577
           K++ SC+KK  V A    DSV  L +  K  V I   P +Y  +K+ I++ YG      +
Sbjct: 175 KLLYSCNKKFRVAASDFWDSVLSLNEADKLSVDIGHFP-SYSVLKSAILN-YGYIFDNCT 232

Query: 578 AVAKAGPVVTDNG--NFILDWM 637
            V+ +  V+ D+G    I++W+
Sbjct: 233 EVSTSESVIADDGPPQNIIEWL 254


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -2

Query: 273 IISCFA*KEVGMQVTFSFSDSTRSASLCTA*TTVDPLLFSLIT 145
           +I CF+ K VG+Q T S + +  SAS C    T  P  F++ T
Sbjct: 34  MIRCFS-KRVGIQFTPSAASAAASASSCPVKKTQCPCSFAVAT 75


>08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754
          Length = 203

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 390 RHPPPPLISVMFESTSSAPSIVTSIFGFVSSSPRLSPCLIISC 262
           R PPPP  S  + + S     +    G  S +PRLS  L ++C
Sbjct: 22  RPPPPPSKSPSYINPSVPDIFIELCIGRRSPAPRLSTTLPLAC 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,124,406
Number of Sequences: 37544
Number of extensions: 358008
Number of successful extensions: 903
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)