Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12p07
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 250 2e-67
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 35 0.014
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 29 0.90
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 27 3.6
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 4.8
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 6.4
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 6.4
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |... 26 6.4
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 25 8.4
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 8.4
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 8.4
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 25 8.4
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 25 8.4
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 250 bits (611), Expect = 2e-67
Identities = 111/164 (67%), Positives = 139/164 (84%)
Frame = +3
Query: 150 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 329
FLFTSESVGEGHPDK+CDQISDAILDA L DP +KVACET +KTGMV++ GEIT+++ +
Sbjct: 5 FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQI 64
Query: 330 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGL 509
DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+H + EE+GAGDQG+
Sbjct: 65 DYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGI 124
Query: 510 MFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSK 641
MFGYATDET E +PLT++LAHKLN ++ RR+G W RPD+K
Sbjct: 125 MFGYATDETPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTK 168
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 638 KTQVTCEYVFAGGATVPQRVHTVVVSLQHSE 730
KTQVT EY GA +P+RV T+VVS QH++
Sbjct: 168 KTQVTIEYEEENGAVIPRRVDTIVVSAQHAD 198
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 34.7 bits (76), Expect = 0.014
Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 2/190 (1%)
Frame = -1
Query: 697 NSLWDCCTTSKYIFASNLCFESGLAHQN--SPFRLSSAIF*LSLCASTTVNGMHSSVSSV 524
+SL D + S I S+ E ++ + S L+S+ F SL +ST+ + SVSS
Sbjct: 136 SSLLDPSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTF-SSLSSSTSSS--QPSVSST 192
Query: 523 A*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLHVL*SKPLDESS*PICLTVSRT 344
+ +P TSSS+L S + + SS+S TL S L SS P + S +
Sbjct: 193 SSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT---SSSLSTSSIPSTSSSSSS 249
Query: 343 TF**STLALDVISPHKSTIPVLVMVSHATFASGS*FRCASRIASLIWSHILSG*PSPTDS 164
T S + S S+ ++S ++ +S S +S I+S S S P+ T S
Sbjct: 250 TS-SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISS---SSSSSSSPTSTSS 305
Query: 163 DVNKNTDPSS 134
++ ++ SS
Sbjct: 306 TISSSSSSSS 315
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 28.7 bits (61), Expect = 0.90
Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 4/113 (3%)
Frame = +3
Query: 3 DLFSTVLIQGDCLG---LY*WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSES 170
D S + GD L L W + K M S T S+D E S+F S+S
Sbjct: 613 DKLSNTQLVGDLLTSLILNVWPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKS 672
Query: 171 VGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 329
V E CD+ SD L K E L+ G+ TS+ ++
Sbjct: 673 VPEDPVSVFCDEESDESLRLRAE-----KTLVENALSENFTLMLGQSTSEESL 720
>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = -1
Query: 655 ASNLCFESGLAHQ--NSPFRLSSAIF*LSLCASTTVNGMHSSVSSV 524
A + F G A++ N+PF +S +++ S +T ++G+H V ++
Sbjct: 180 ALSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTI 225
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 186 PDKMCDQISDAILDA-HLNQDPDAKVACETITKTGM 290
P K ++ D ++ + H N DPDAK+A ++K M
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDM 215
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 539 RMHAVDCSACTQTQSENCRAQAKWRILVGKTRFKTQVTCEYVFAGGATVPQRVHTVVVS 715
+ H C C++T + CR A + QVTCE + G +R+ T+++S
Sbjct: 492 KCHLGSCGTCSETLTIPCRCTAN----------EVQVTCEQLQNGFIPTCERLCTILLS 540
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -3
Query: 422 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 297
EH+ C+ + G ++++ DR + I +S C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142
>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 318 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 437
+ N DY K+ E VK G D+ K C ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -1
Query: 721 LQXHDYSMNSLWDCCTTSKYIFASNLCFESGLAHQNSPFRLSSAIF*LS 575
+Q D S W C T +FA+ +G ++N P + + F LS
Sbjct: 565 MQRPDGSWYGSWAICFTYAAMFATGSLASAGRYYENCPVQKKACEFLLS 613
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Frame = -3
Query: 632 WSCPPKFSISPELCNFLIEF---------VCKHYSQRHAFFCLICCITEHQAL 501
W C PK ++ C FL F KH ++R C C + HQ+L
Sbjct: 46 WVCDPKLQVAVRECLFLFSFQNDNEYLVWFKKHLNER-LQLCPKCIVKYHQSL 97
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 206 LVAHFVWMTLANRFRCEQKY*SIFHII 126
L+ HFVW + CE+K+ S H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -1
Query: 613 SPFRLSSAIF*LSLCASTTVN--GMHSSVSSVA*PNIKPWSPAPTSSSFLFS 464
+P+ + +F +S+ S+T G+ S+ + + P SP+ + S+FLF+
Sbjct: 206 NPWAAGTQLFLVSVLQSSTGERVGLSGSIDMLKDEYLSPQSPSFSKSNFLFA 257
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 453 QQCLVIVGLVRASHCMSCNQSLWTNHHNQYV*PFRAQLFD 334
Q +V V + + CM+ +QSL + HN ++ F+ +L D
Sbjct: 61 QYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,314,938
Number of Sequences: 5004
Number of extensions: 73375
Number of successful extensions: 242
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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