Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12p07
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 222 2e-58
01_02_0051 - 10655867-10657057 221 6e-58
01_03_0090 - 12347165-12348349 219 2e-57
10_06_0022 - 9716537-9716649,9716709-9716826,9716958-9717076,971... 31 1.2
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 29 2.9
10_06_0023 - 9727326-9727438,9727835-9727903,9727965-9728082,972... 29 5.0
12_02_0655 + 21588662-21589051 28 8.8
04_03_0847 - 20254736-20254933,20256127-20256201,20257538-202577... 28 8.8
>05_01_0264 + 2030080-2031270
Length = 396
Score = 222 bits (543), Expect = 2e-58
Identities = 103/166 (62%), Positives = 130/166 (78%), Gaps = 2/166 (1%)
Frame = +3
Query: 150 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 329
FLFTSESV EGHPDK+CDQ+SDA+LDA L +DPD+KVACET TKT MV++ GEIT+KANV
Sbjct: 7 FLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANV 66
Query: 330 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 503
DY+K+VRET ++IG+ + G D C V++ ++QQSP+IA GVH + + EE+GAGDQ
Sbjct: 67 DYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQ 126
Query: 504 GLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSK 641
G MFGYATDET E MPL+ VLA KL ++ E+R+NG W RPD K
Sbjct: 127 GHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGK 172
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = +2
Query: 638 KTQVTCEYVFAGGATVPQRVHTVVVSLQHSE 730
KTQVT EY GA VP RVHTV++S QH E
Sbjct: 172 KTQVTVEYRNESGARVPVRVHTVLISTQHDE 202
>01_02_0051 - 10655867-10657057
Length = 396
Score = 221 bits (539), Expect = 6e-58
Identities = 103/172 (59%), Positives = 132/172 (76%), Gaps = 2/172 (1%)
Frame = +3
Query: 132 MEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEI 311
M + FLFTSESV EGHPDK+CDQISDA+LDA L +DP++KVACET TKT MV++ GEI
Sbjct: 1 MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEI 60
Query: 312 TSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEE 485
T+KANVDY+K+VR+T + IG+ + G D + C V++ ++QQSP+IA GVH + + EE
Sbjct: 61 TTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEE 120
Query: 486 VGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSK 641
+GAGDQG MFGYATDET E MPL+ VLA KL ++ E+R+NG W RPD K
Sbjct: 121 IGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGACAWLRPDGK 172
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = +2
Query: 638 KTQVTCEYVFAGGATVPQRVHTVVVSLQHSE 730
KTQVT EY GA VP RVHTV++S QH E
Sbjct: 172 KTQVTVEYQNDNGAMVPLRVHTVLISTQHDE 202
>01_03_0090 - 12347165-12348349
Length = 394
Score = 219 bits (534), Expect = 2e-57
Identities = 102/166 (61%), Positives = 127/166 (76%), Gaps = 2/166 (1%)
Frame = +3
Query: 150 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 329
FLFTSESV EGHPDK+CDQ+SDA+LDA L QDPD+KVACET TKT MV++ GEIT+KA V
Sbjct: 6 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKATV 65
Query: 330 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 503
DY+K+VR+T + IG+ G D C V++ ++QQSP+IA GVH + + EE+GAGDQ
Sbjct: 66 DYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQ 125
Query: 504 GLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSK 641
G MFGYATDET E MPL+ VLA KL ++ E+R+NG W RPD K
Sbjct: 126 GHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGK 171
Score = 44.4 bits (100), Expect = 9e-05
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +2
Query: 638 KTQVTCEYVFAGGATVPQRVHTVVVSLQHSE 730
KTQVT EY+ GA VP RVHTV++S QH E
Sbjct: 171 KTQVTVEYLNDAGAMVPVRVHTVLISTQHDE 201
>10_06_0022 -
9716537-9716649,9716709-9716826,9716958-9717076,
9717238-9717476,9717793-9717849,9717933-9718019,
9718185-9718729,9718836-9719102
Length = 514
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 258 VACETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDYKTCSVM 419
+ C +I+K GM+L IT + D+ K VR+ KH GY KG +K+ + M
Sbjct: 444 LVCGSISKVGMLLF---ITLRT--DWGKEVRKPSPYKHFGYHGKRKGLQFKSSNSM 494
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +3
Query: 135 EDGSVFLFTSESVGEGHPDKM---CDQISDAILDAHLNQDPDAKVACETITKTGMVLLC 302
+DGS +LFTS+ E HP M D+ S+ IL E I K G L C
Sbjct: 765 QDGSEWLFTSKRTDESHPFTMHVNFDKFSEDILVGDELVIDGGMATFEVIEKVGNDLRC 823
>10_06_0023 -
9727326-9727438,9727835-9727903,9727965-9728082,
9728232-9728350,9728506-9728695
Length = 202
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 258 VACETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDYKTCSVM 419
+ C +I+K GM+L IT + D+ K V++ KH GY KG +K + M
Sbjct: 109 IVCGSISKVGMLLF---IT--LHTDWGKEVQKASPCKHFGYHAERKGLQFKYSNSM 159
>12_02_0655 + 21588662-21589051
Length = 129
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +2
Query: 98 WIRENQRTQL*YGRWISIFVHIGICWRGSSRQNVRPNKRRYSRRASESGSGRK 256
WI QR ++ G W RGS V P +RR SRR SG R+
Sbjct: 27 WIGGRQRPRMWIGDWREE--------RGSVAVGVAPGRRRESRRRPGSGEARR 71
>04_03_0847 -
20254736-20254933,20256127-20256201,20257538-20257717,
20257802-20257869,20258563-20259125,20259198-20259235
Length = 373
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 599 ELCNFLIEFVCKHYSQRHAFFC 534
E+ +FL+ +H +QRHAF C
Sbjct: 87 EVIDFLLALPSRHPAQRHAFLC 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,829,634
Number of Sequences: 37544
Number of extensions: 492564
Number of successful extensions: 1341
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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