Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12p06
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022974-7|AAC48042.2|  293|Caenorhabditis elegans Serpentine re...    33   0.25 
Z70037-1|CAA93878.1|  493|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z83221-9|CAB05710.1|  400|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z82095-8|CAB05029.1|  400|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF000198-9|AAB53057.4|  684|Caenorhabditis elegans Hypothetical ...    29   4.1  
AL021487-8|CAB76733.1|  320|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z71267-8|CAL44974.1|  162|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z69361-1|CAE17943.1|  468|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AF022974-7|AAC48042.2|  293|Caenorhabditis elegans Serpentine
           receptor, class sx protein9 protein.
          Length = 293

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -2

Query: 437 HTAARYIVFFQIAQY-FLYARRHIDLAVQHVDDIIFSFYAFFHTNVSFAAF 288
           H+  R   F+QI+ Y F  A + I + V  +D +IF  Y FF+ ++SF+ +
Sbjct: 71  HSFNRRECFWQISFYIFFQAAQGIIMLVIVIDILIFVKYPFFYRSISFSTY 121


>Z70037-1|CAA93878.1|  493|Caenorhabditis elegans Hypothetical
           protein T27D12.1 protein.
          Length = 493

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -3

Query: 436 IPPRGTLFF-FKSPNIFCMHGGILILLFSMSTTLFF---PSTHSFI 311
           +P  G L   FK P+IF  HG + +LLF ++  LF+   P  H F+
Sbjct: 184 MPASGALCSAFKWPSIFYAHGAVSLLLF-VTYALFYRNSPQKHPFV 228


>Z83221-9|CAB05710.1|  400|Caenorhabditis elegans Hypothetical
           protein C49A1.2 protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -2

Query: 446 LPVHTAARYIVFFQIAQYFL---YARRHIDLAVQHVDDIIFSFYAFF 315
           +P+  A    VF  +  YFL   + R+H+DL+  H  D  F     F
Sbjct: 239 IPIPLAYPQAVFLAVRFYFLVCLFTRQHLDLSDHHAIDYFFPLLTSF 285


>Z82095-8|CAB05029.1|  400|Caenorhabditis elegans Hypothetical
           protein C49A1.2 protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -2

Query: 446 LPVHTAARYIVFFQIAQYFL---YARRHIDLAVQHVDDIIFSFYAFF 315
           +P+  A    VF  +  YFL   + R+H+DL+  H  D  F     F
Sbjct: 239 IPIPLAYPQAVFLAVRFYFLVCLFTRQHLDLSDHHAIDYFFPLLTSF 285


>Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical
           protein T07C12.6 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 392 FLYARRHIDLAVQHVDDIIFSFYAFFHTNVSFAAFFKIGIFN 267
           +LY    I   +  + ++IF F+AF+  +V    + KI +F+
Sbjct: 20  YLYNEPDIVRIIVSITELIFYFFAFYINSVCLKVYLKIQLFH 61


>AF000198-9|AAB53057.4|  684|Caenorhabditis elegans Hypothetical
           protein T28F2.7 protein.
          Length = 684

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -2

Query: 422 YIVFFQIAQYFLYARRHIDLAVQHVDDIIFSFYAFFHTNVSFAAFFKIGIFNC 264
           Y++ F      LY R   D A  H  D +F  Y   H N +   FF    F+C
Sbjct: 181 YLMMFNSDAMTLYGRA--DAASLHSGDNVFKHYVSSHPNFTADNFFMDAGFSC 231


>AL021487-8|CAB76733.1|  320|Caenorhabditis elegans Hypothetical
           protein Y45F10B.14 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 460 FSINLFLYIPPRGTLFFFKSPNIFCMHGGILILLFSMSTTLFFPSTHSFI 311
           +SIN+ +Y+  +  ++       F M G +LI  FS  T+ FF S +  I
Sbjct: 245 YSINVVMYVLEQSGIYASPFFENFIMSGLVLIPFFSPFTSFFFFSPYKRI 294


>Z71267-8|CAL44974.1|  162|Caenorhabditis elegans Hypothetical
           protein W01A8.8 protein.
          Length = 162

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 495 CENRCLIKALTHFYNYDSKCVGEVMHLLIKSQ-DVYKPPN-CQKMKTVDKLCPFAGN 659
           C   CL+KA+ +   Y + C  ++     KS  D Y   N C+  KT +KL  F G+
Sbjct: 76  CSTNCLVKAIVNISEYSTSCT-QIQEEAFKSHVDCYLNCNFCEVCKT-EKLA-FLGS 129


>Z69361-1|CAE17943.1|  468|Caenorhabditis elegans Hypothetical
           protein T13H10.2 protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 589 WDLIKRCMTSPTHLES*L*KCVRALIKHRFSH 494
           W LIK C  +    +    KCVR  ++HR  H
Sbjct: 413 WTLIKECSENSKSWKCSSRKCVRPSVRHRSLH 444


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,202,453
Number of Sequences: 27780
Number of extensions: 381539
Number of successful extensions: 966
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)