Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12p05
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   2.5  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    26   3.3  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.4  
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    25   5.8  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   5.8  

>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 167 NASIFKKNYNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKSK 298
           + S +  N++N+ +  +   P+ TN++     D + + S  KSK
Sbjct: 53  STSSYSGNHHNINIQHHPNRPFRTNSSSFSPNDYSISESPSKSK 96


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 959

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 419  KTHFKANLFNKYITVKVLQNCRRQYNTAAA 330
            K+H+ AN+F+ +I     Q  + Q  + AA
Sbjct: 914  KSHYNANIFHDFINWGAQQRLKHQQTSTAA 943


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 188 NYNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKSKARRRL 313
           NY NVK+ +          A + +  TTNA  +P  K  + L
Sbjct: 67  NYTNVKITATQNNVDALTGAPIRIVTTTNARIQPDEKTLQDL 108


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 381 HSKGFAKLPSSIQHGCGAMLVKSNLLLALD-FGRE-GAFVVSVISTSALFV 235
           H+KGF  LPS + + C   L +   +  ++  G E  A  VSV+     FV
Sbjct: 219 HTKGFLNLPSGVWYLCFNTLAQYFCVRGVNALGAETSALTVSVVLNVRKFV 269


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +2

Query: 143 HPYQRAPWNASIFKKNYNNVK-VASYIEVPYTTNNA-DVEMTDTT-NAPSRPKSKARRRL 313
           H Y+        F  + +N++ + S I VP   ++  D+E  D   + P RP S A +  
Sbjct: 223 HRYKSQHHRLRQFYADCSNLRYLTSLISVPRLPHDPPDLEGDDNIPDLPKRPASIAPQPT 282

Query: 314 DFTNMAPQP 340
             + +APQP
Sbjct: 283 GASTIAPQP 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,756,753
Number of Sequences: 5004
Number of extensions: 34253
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)