Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12p05
         (468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0717 + 35702592-35703152,35703789-35704121                       28   3.3  
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748...    27   7.5  
05_04_0077 - 17712043-17712246,17712487-17712522,17712746-177129...    27   10.0 

>03_06_0717 + 35702592-35703152,35703789-35704121
          Length = 297

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 307 SPCFRFWARGRICCVSHFDVCIICCVRYFNV 215
           S C R W RGR+   SHF      C+R  +V
Sbjct: 114 SECKRGWLRGRVTHSSHFWASTSACLRRSHV 144


>04_04_1477 +
           33873976-33874080,33874433-33874544,33874777-33874874,
           33875548-33876261,33876348-33876518,33876955-33877011,
           33877096-33878718
          Length = 959

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +2

Query: 122 DHTMERYHPYQRAPWNASIF--KKNYNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKS 295
           D TM+ Y   Q +      F  +K+ N    A+ ++    T+N  V  +++ +  ++PK 
Sbjct: 589 DDTMDAYKTEQTSEMEGKKFMARKSCNPAFAAAQLKFEELTSNLTVSRSNSLDGANKPKV 648

Query: 296 KARRRLDFTNMAPQ 337
              R  D  N++P+
Sbjct: 649 HTPRSQD--NVSPK 660


>05_04_0077 -
           17712043-17712246,17712487-17712522,17712746-17712900,
           17713431-17713591,17713950-17714110,17714188-17715657,
           17715704-17715998,17716461-17717737,17717826-17718137,
           17718223-17718356,17718449-17718521,17719994-17720059,
           17720748-17720936
          Length = 1510

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 248 DVEMTDTTNAPSRPKSKARRRLDFTNMAPQPCCIDDG 358
           DV+  ++ N    PK KA+ ++     A     +DDG
Sbjct: 418 DVKAANSANDDKHPKGKAKLKVTLVRNAKMESSLDDG 454


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,264,655
Number of Sequences: 37544
Number of extensions: 185841
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)