Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc12p04
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.53 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.6  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   1.6  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   5.0  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   5.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.7  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 176 EPVLTLPSTHLIAPLQSVFQLSVEIFKRRTFI 81
           +P+LT PS++ ++P+ S   L + I  R T I
Sbjct: 432 DPILTPPSSNPVSPVPSPDPLDLAIPVRETLI 463



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -1

Query: 627 IQLPKQLFLPDSPYLCHNCCRCFRH 553
           + + +++   + PY C  C R F H
Sbjct: 135 LSVHRRIHTKERPYKCDVCERAFEH 159


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = +3

Query: 441 KPNAVVTCKFYKKTQERVPAVQQYKNIIKVLQERSVISVENSDNNCDINMENQAKIVALE 620
           +P+  V      K    +P +Q   NI+  + E+ +I  +    +         ++VALE
Sbjct: 299 RPDENVVTDKKSKVNFALPELQHNLNILVDMCEQDIIQNDRRTRHLS------DRVVALE 352

Query: 621 AELKNEKNHSDQ 656
           AE KN     DQ
Sbjct: 353 AEKKNLSKVIDQ 364


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +3

Query: 585 NMENQAKIVALEAELKNEKNHSDQVTSENRQ 677
           N + + ++  +    + ++ HSD+VTS+ +Q
Sbjct: 62  NEQQRKEMEQMREREREQREHSDRVTSQQQQ 92


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 210 AELKKEPVINFKFECSVCFETYSQQSNDTCPFLI 311
           AELK+      + ECS C E   + ++    FLI
Sbjct: 61  AELKRNLPDALENECSPCSEKQKKIADKVVQFLI 94


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 210 AELKKEPVINFKFECSVCFETYSQQSNDTCPFLI 311
           AELK+      + ECS C E   + ++    FLI
Sbjct: 61  AELKRNLPDALENECSPCSEKQKKIADKVVQFLI 94


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 24  PISKMPRDTNNRRRHRSTPYERPTLEDLHR 113
           PIS    +  +R  +    YE+P+ EDL R
Sbjct: 330 PISPEQEELIHRLVYFQNEYEQPSEEDLKR 359


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 526 LIMFLYCCTAGTLS*VF 476
           L +F   CTAGTL  +F
Sbjct: 486 LWVFTLACTAGTLGIIF 502


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 82  YGVDRWRRRLLVSLGILLIG 23
           YGV R  RR++V + ++ +G
Sbjct: 149 YGVKRTPRRMIVYVSLVWLG 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,492
Number of Sequences: 438
Number of extensions: 4144
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)