Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc12o24
(154 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 90 3e-19
03_01_0547 + 4093196-4093657,4094267-4095148 90 3e-19
03_01_0544 + 4082528-4082989,4083585-4084466 90 3e-19
03_01_0543 + 4076981-4077442,4078145-4079026 90 3e-19
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 64 1e-11
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 64 1e-11
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 55 9e-09
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 55 9e-09
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 54 2e-08
02_04_0462 + 23131433-23132836 39 5e-04
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 38 8e-04
01_01_0016 - 88825-90411 27 2.7
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 26 4.8
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 25 8.3
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 89.8 bits (213), Expect = 3e-19
Identities = 43/50 (86%), Positives = 46/50 (92%)
Frame = +3
Query: 3 FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGVKQ 152
FIKNMITGTSQADCAVLI+ + TG FEAGIS +GQTREHALLAFTLGVKQ
Sbjct: 98 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQ 147
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 89.8 bits (213), Expect = 3e-19
Identities = 43/50 (86%), Positives = 46/50 (92%)
Frame = +3
Query: 3 FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGVKQ 152
FIKNMITGTSQADCAVLI+ + TG FEAGIS +GQTREHALLAFTLGVKQ
Sbjct: 98 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQ 147
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 89.8 bits (213), Expect = 3e-19
Identities = 43/50 (86%), Positives = 46/50 (92%)
Frame = +3
Query: 3 FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGVKQ 152
FIKNMITGTSQADCAVLI+ + TG FEAGIS +GQTREHALLAFTLGVKQ
Sbjct: 98 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQ 147
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 89.8 bits (213), Expect = 3e-19
Identities = 43/50 (86%), Positives = 46/50 (92%)
Frame = +3
Query: 3 FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGVKQ 152
FIKNMITGTSQADCAVLI+ + TG FEAGIS +GQTREHALLAFTLGVKQ
Sbjct: 98 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQ 147
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 64.5 bits (150), Expect = 1e-11
Identities = 29/50 (58%), Positives = 36/50 (72%)
Frame = +3
Query: 3 FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGVKQ 152
++ NMI+G SQAD VL+++A GEFE G GQTREH LLA TLGV +
Sbjct: 44 YVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVLLAKTLGVSK 93
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 64.1 bits (149), Expect = 1e-11
Identities = 29/48 (60%), Positives = 35/48 (72%)
Frame = +3
Query: 3 FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGV 146
++ NMI+G SQAD VL+++A GEFE G GQTREH LLA TLGV
Sbjct: 89 YVPNMISGASQADIGVLVISARKGEFETGYEKGGQTREHVLLAKTLGV 136
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 54.8 bits (126), Expect = 9e-09
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 5/55 (9%)
Frame = +3
Query: 3 FIKNMITGTSQADCAVLIVAAGTGEFEAGISXN-----GQTREHALLAFTLGVKQ 152
F+ NMI+G +QAD A+L+V A TG FEAG+ GQT+EHA L + GV+Q
Sbjct: 338 FVPNMISGATQADAAILVVDACTGSFEAGMDGEGGKSVGQTKEHAQLIRSFGVEQ 392
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 54.8 bits (126), Expect = 9e-09
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 5/55 (9%)
Frame = +3
Query: 3 FIKNMITGTSQADCAVLIVAAGTGEFEAGISXN-----GQTREHALLAFTLGVKQ 152
F+ NMI+G +QAD A+L+V A TG FEAG+ GQT+EHA L + GV+Q
Sbjct: 338 FVPNMISGATQADAAILVVDACTGSFEAGMDGEGGKSVGQTKEHAQLIRSFGVEQ 392
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 53.6 bits (123), Expect = 2e-08
Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Frame = +3
Query: 3 FIKNMITGTSQADCAVLIVAAGTGEFEAGISXN--GQTREHALLAFTLGV 146
F+ NMI+G +Q+D A+L++ A G FEAG+ N GQT+EH+ L + GV
Sbjct: 325 FVPNMISGATQSDAAILVIDASIGSFEAGMGINGIGQTKEHSQLVRSFGV 374
>02_04_0462 + 23131433-23132836
Length = 467
Score = 39.1 bits (87), Expect = 5e-04
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +3
Query: 3 FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGV 146
++KNMITG +Q D A+L+V+ G QT+EH LLA +GV
Sbjct: 146 YVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHILLAKQVGV 186
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 38.3 bits (85), Expect = 8e-04
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +3
Query: 3 FIKNMITGTSQADCAVLIVAAGTGEFEAGISXNGQTREHALLAFTLGV 146
++KNMITG +Q D +L+V+A G QT+EH LLA +GV
Sbjct: 143 YVKNMITGAAQMDGGILVVSAPDGPMP-------QTKEHILLARQVGV 183
>01_01_0016 - 88825-90411
Length = 528
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 131 SEQGMLTGLTVXRDTSFEFTGTGSYDEHSA 42
+ +G+L L+V F+ TGT + D+H A
Sbjct: 249 ARRGLLPALSVIEPRYFDLTGTPADDDHPA 278
>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +1
Query: 22 QEPLRLIALCS----S*LPVPVNSKLVSLXTVKPVSMPCSLSPS 141
Q P+RL + CS + + PVN++ +S +V PVS S S S
Sbjct: 1821 QLPVRLESTCSRTQLTPVSTPVNARQLSSQSVSPVSNSSSSSSS 1864
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 107 LTVXRDTSFEFTGTGSYDEHSAISLRGSCDHVLDE 3
+ + D F+G + + I LRG+ +HVLDE
Sbjct: 345 IMIGEDKLIHFSGV-AMGQACTIVLRGASEHVLDE 378
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,832,856
Number of Sequences: 37544
Number of extensions: 51677
Number of successful extensions: 141
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 14,793,348
effective HSP length: 31
effective length of database: 13,629,484
effective search space used: 258960196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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